Caldisericum exile: CSE_06250
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Entry
CSE_06250 CDS
T01804
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cex
Caldisericum exile
Pathway
cex03030
DNA replication
cex03410
Base excision repair
cex03420
Nucleotide excision repair
cex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CSE_06250 (ligA)
03410 Base excision repair
CSE_06250 (ligA)
03420 Nucleotide excision repair
CSE_06250 (ligA)
03430 Mismatch repair
CSE_06250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cex03032
]
CSE_06250 (ligA)
03400 DNA repair and recombination proteins [BR:
cex03400
]
CSE_06250 (ligA)
Enzymes [BR:
cex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CSE_06250 (ligA)
DNA replication proteins [BR:
cex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CSE_06250 (ligA)
DNA repair and recombination proteins [BR:
cex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CSE_06250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSE_06250 (ligA)
MMR (mismatch excision repair)
DNA ligase
CSE_06250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CSE_06250 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_3
DUF4796_N
UPF0758_N
Bep_C_terminal
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAL80751
UniProt:
A0A7U6JEI0
LinkDB
All DBs
Position
596613..598649
Genome browser
AA seq
678 aa
AA seq
DB search
MKIDVSHLTREQAEKRLKELRDIINYHNYRYYVLDSPEITDAEYDRLFQELLAIEERFPD
LITPDSPSQKVGAPPLDEFPEVIHSVPMLSLGNAFNDEDLMEFDRRVKRESGLSKIEYET
ELKMDGLAISIRYENGILVRGATRGDGVRGEDVTPNVKTVRGVPLRLLIDNPPPVIEVRG
EVIMYKEDFEKLNNERIQKGEPPFANPRNAAAGSIRQLDSRITAERKLHMIAYGVGEVVG
VEFKTQFELLQYLNKIGFRISPEVKVHRDIESVIVEVKRLTAIRDSFPFGADGIVVKVND
IELQKRLGATSHEPRWAIAYKFPAEEAETIVKDIIFSVGRTGAVTPVAIFEPVEIDGSIV
SRASLHNEDIAKALDIRVGDHVIVHKAGSVIPEVVRVVKEKRKGDEITFKMPDRCPVCGG
PLIREEGFAVTRCPNVRCPAQVKERIIHFVSRDAMDIESIGEKLVDQMVDRGLVTDYGDL
YYIPKEKLLTLERMGPVLAEKILRNIEESKSRPLANLIYALGIFNVGKRTAELLAEHFKS
LENLMNAKIEDILQIEGIGPVTAKSIVEFFESSGNRMVIDKLIKAGVNTKEVPKEKENVG
PLKGLTFVFTGALKEFTRSEAGKIVESLGGSVSDTISKKVDYLVVGEDPGSKLEKAQKLG
IKIINEDEFKKMIGYGGK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgacgtttctcatctaacacgagagcaagcagaaaaaaggcttaaagaatta
agggatataataaactatcataattatcgttattatgtgcttgattctccagaaattacc
gatgcagaatatgacagactatttcaagaattgcttgcaatagaagagcgatttccagat
ttgattacacctgattcaccgtcacagaaagttggagcgccacctcttgacgagtttccc
gaagttatacatagtgttccaatgctttcgcttggtaacgcattcaatgatgaagattta
atggagtttgacagaagagtaaaaagagagtctggattgtccaaaattgagtacgagacg
gagctaaagatggatggtcttgcaatatcaataagatatgaaaatggaatcttagttagg
ggtgcaactcgaggtgatggggtaagaggtgaggatgttacccctaatgttaaaacggta
aggggcgttcctctaaggcttttaatagataatcccccacctgtaattgaagtgcgtggg
gaagtaataatgtataaagaagactttgaaaaacttaataatgaaaggattcaaaaaggc
gaacctccttttgcaaatccaagaaatgctgctgcaggttcaattagacaacttgattca
aggataacagcagagagaaaactccatatgattgcctatggtgtaggggaagttgttggt
gtcgaatttaaaactcagtttgaactattacaatacctcaataaaatcggttttagaatt
agtccagaagtaaaggtacatagagatattgaaagcgtgattgtagaagttaagaggctc
acagcaattagagattcatttccctttggcgctgatggtattgttgtgaaagtaaatgat
attgaattgcagaagagattaggagcaacatctcacgagccacgttgggcaattgcatat
aagtttcctgcagaagaggctgaaactattgttaaagatattatttttagcgttggaaga
actggtgcagtaacccccgttgcgatatttgaacccgtggagattgatggatctattgtt
tcaagagcctctctccataatgaagatattgcaaaagcgcttgatatccgtgttggcgat
catgtaattgttcacaaggcagggtctgtgatccctgaggttgtaagagttgtgaaagaa
aaaagaaaaggagatgaaattacattcaaaatgcctgatagatgtcctgtatgcggtggt
cctcttataagggaagagggttttgcagtaactcgttgtcctaatgtccgatgtcctgcg
caggttaaagagcgtataattcacttcgtttcaagagatgcaatggatatagaatcaatt
ggtgagaaacttgtagatcaaatggttgatagaggccttgttacagattatggcgatcta
tactacataccaaaagaaaaacttcttactcttgaaagaatgggaccggtgcttgcagaa
aagatcttacgaaacattgaggaaagtaaatcgagaccattggcaaatctcatatatgca
cttggtatttttaatgttgggaagagaaccgcagaactccttgcagaacattttaaatca
cttgaaaatcttatgaatgcaaaaattgaagatattttacaaattgagggaattggtcct
gtaacagcgaagtcgattgtagaattttttgaatcttcaggaaatagaatggtcattgat
aaactcatcaaggcaggcgttaacacaaaagaggtaccaaaagaaaaggagaatgttggt
ccgttaaaaggtctcacattcgtttttactggtgcacttaaagagttcacgagaagtgaa
gcaggtaaaattgttgaaagccttggtggaagcgtttctgatactataagtaagaaagtt
gattaccttgtcgtaggagaggatccaggttcaaaactggaaaaggctcaaaaacttggc
ataaagataatcaatgaggatgaatttaaaaaaatgatcggatacggaggaaagtga
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integrated database retrieval system
