Corallococcus exiguus: ACN6A2_27570
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Entry
ACN6A2_27570 CDS
T11255
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cexi Corallococcus exiguus
Pathway
cexi03030
DNA replication
cexi03410
Base excision repair
cexi03420
Nucleotide excision repair
cexi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cexi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACN6A2_27570 (ligA)
03410 Base excision repair
ACN6A2_27570 (ligA)
03420 Nucleotide excision repair
ACN6A2_27570 (ligA)
03430 Mismatch repair
ACN6A2_27570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cexi03032
]
ACN6A2_27570 (ligA)
03400 DNA repair and recombination proteins [BR:
cexi03400
]
ACN6A2_27570 (ligA)
Enzymes [BR:
cexi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACN6A2_27570 (ligA)
DNA replication proteins [BR:
cexi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACN6A2_27570 (ligA)
DNA repair and recombination proteins [BR:
cexi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACN6A2_27570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACN6A2_27570 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACN6A2_27570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACN6A2_27570 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XWU90922
LinkDB
All DBs
Position
complement(6704180..6706204)
Genome browser
AA seq
674 aa
AA seq
DB search
MDTFPKAEARARALRQELAHHNHRYYVLDAPEISDAQYDTLMRELQGLEEQYPQLMTPDS
PTQRVGGAAVDDFGQVVHTTQMLSLANIFDDAGLTEFDDRIRKLTGLSQVGYVCEPKLDG
LAISLRFEDGRFVQGATRGDGTTGEDVTGNLRTIKSLPLELFPQDGVKVPRRLEVRGEVF
IRKEDFRKLNEKREEAGESLFANPRNAAAGSLRQLDPKETAARPLSVYLYECVPGDGVPA
FKTHTEKLEYLKTLGLPINRYQHADGADGVRQRYDESLKGRHALPFEVDGMVVKVDDEDL
RRRLGQVSKSPRWAVAYKFPPEEESTTVDDIGIQVGRTGALTPVAHLKPVKVGGVTVSRA
TLHNEDELRRKNVRKGDTVFVRRAGDVIPEIVSVVLSKRPEDSQPFTFPTHCPVCGAVAA
KDEDGAIIRCTGASCPAQLVEKVRHFASRLALDIEGLGDKLAMQLVTSGQVKAFADLFAL
TRDSLLKLERMGEKSADNLLASIAGSKDTTQRRFLYSLGIRHVGDSTARALAESFPEVRS
LFTASLEDISRVKDVGPVMAQVIHTFFQEPQNQAAIQALLDAGVHPAPPAVATGGPFVGK
TVVLTGTMERLAREQAKEEIERRGGKVSGSVSRKTDFVVAGEDAGTKLKKAQELGVRILD
EQAFLKLLEGDARA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtggacaccttcccgaaagccgaagcccgcgcccgagcgctccgtcaggagctggcccac
cacaaccaccgctactacgtgctggacgcgccggaaatcagcgacgcccaatacgacacg
ctgatgcgtgagctccaggggctggaggagcagtacccccagctgatgacgccggactcg
cccacccagcgcgtgggcggcgcggcggtggacgacttcgggcaggtggtgcacaccacg
cagatgctgtcgctggcgaacatcttcgatgacgccgggctgacggagttcgacgaccgc
atccgcaagctgacgggcctgtcgcaggtgggctacgtgtgcgagcccaagctggacggc
ctggccatctccctgcgcttcgaggacggccgcttcgtgcagggcgccacgcgcggcgac
ggcaccaccggcgaggacgtcacgggcaacctgcgcaccatcaagagcctgcccctggag
ctgttcccccaggacggcgtgaaggtgcccaggcggttggaggtccgcggcgaggtcttc
atccgcaaggaggacttccgcaagctcaacgagaagcgcgaagaggcgggcgagtcgctc
ttcgccaacccgcgcaacgccgccgcgggcagcctgcgccagttggaccccaaggagacc
gccgcccggcccctgtccgtctacctgtacgaatgcgtgcccggcgacggcgtgcccgcc
ttcaagacgcacacggagaagctggagtacctgaagacgctgggcctgcccatcaaccgc
taccagcacgcggacggggcggacggcgtgcgccagcgctacgacgagtccctgaagggc
cgccacgccctgcccttcgaagtcgacggcatggtggtgaaggtggacgacgaggacctg
cgccgccgcctgggccaggtgtccaagagcccgcgctgggcggtggcctacaagttcccg
ccggaggaggagtccaccacggtggacgacatcggcatccaggtgggccgcacgggcgcg
ctcacgccggtggcgcacctgaagccggtgaaggtgggcggcgtgacggtgtcgcgcgcc
acgctgcacaacgaggacgagctgcgccgcaagaacgtgcgcaagggcgacaccgtcttc
gtgcgccgcgcgggtgacgtgattccggagatcgtctccgtggtgctgtccaagcgcccg
gaggactcccagcccttcaccttccccacccactgccccgtgtgcggcgcggtggcggcc
aaggacgaggacggcgccatcatccgctgcacgggcgcgtcctgccccgcgcagctggtg
gagaaggtgcgccacttcgccagccgcctcgccctggacattgaaggcctgggggacaag
ctggccatgcagttggtgacgtccgggcaggtgaaggcgttcgcggacctgttcgcgctc
acccgggactcgctgctcaagctggagcgcatgggggaaaagagcgcggacaacctgctg
gcctccatcgcgggcagcaaggacaccacccagcgccgcttcctgtattcgctgggcatc
cgccacgtgggcgactccacggcgcgcgccctggcggagtccttcccggaggtgaggtcg
ctcttcacggccagcctggaggacatcagccgggtgaaggacgtgggcccggtgatggcg
caggtcatccacaccttcttccaggagccccagaaccaggccgccatccaggccctcctg
gacgcgggagtccacccggcccccccggcggtcgccacgggcggccccttcgtgggcaag
acggtggtgctcaccggcaccatggagcggcttgcgcgcgagcaggccaaggaggaaatc
gaacggcgcggcggtaaggtctccggaagtgtctcgcgcaagaccgatttcgtcgtcgcc
ggcgaggacgcgggtaccaagctgaagaaggctcaggaattgggcgtaagaatcctggat
gagcaggcgttcctgaagctgctagaaggggatgccagagcatga
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integrated database retrieval system
