Coxiella mudrowiae: CleRT_07610
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Entry
CleRT_07610 CDS
T03998
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cey
Coxiella mudrowiae
Pathway
cey03030
DNA replication
cey03410
Base excision repair
cey03420
Nucleotide excision repair
cey03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CleRT_07610 (ligA)
03410 Base excision repair
CleRT_07610 (ligA)
03420 Nucleotide excision repair
CleRT_07610 (ligA)
03430 Mismatch repair
CleRT_07610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cey03032
]
CleRT_07610 (ligA)
03400 DNA repair and recombination proteins [BR:
cey03400
]
CleRT_07610 (ligA)
Enzymes [BR:
cey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CleRT_07610 (ligA)
DNA replication proteins [BR:
cey03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CleRT_07610 (ligA)
DNA repair and recombination proteins [BR:
cey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CleRT_07610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CleRT_07610 (ligA)
MMR (mismatch excision repair)
DNA ligase
CleRT_07610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CleRT_07610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
HHH_3
5_3_exonuc
Zn_ribbon_PF0610
DUF4874
CdsD_PD2
Mod_r
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AKQ33576
LinkDB
All DBs
Position
803881..805893
Genome browser
AA seq
670 aa
AA seq
DB search
MAVPEKIRKQVKQLRKEINDYDYRYYVLSEPVIPDSIYDQLFHELKQLEEKYPELIVSTS
PTQRVGSEPLKTFKTVFHEIPMLSLDNVFDESGLRAFDKRIRQRLKSNGPIEYTCEPKMD
GVALSLLYEKGELIRAATRGDGFAGEDVTQNARTISTIPLQLRGHDFPRVVQIRGEVLMP
REGFEKFNREAEKRGKKVFANPRNAASGSLRQLDPRITAKRPLIFYGYFLGLVRSSDLPQ
KHSDVLVRFKKWGIPVISETMVVEDIKACFGYYEHLRKIRDMIPFDIDGVVVKVNSLSLQ
EKLGFVSHAPRWAIAYKFPAQEKMTVVNDIEFYVGRTGAVTPVARLEPVSVGRVTVRNAT
LHNFNELRRKDIRVGDTVIVRRAGDVIPEIVAPLLAKRPKNAKVIKIPTRCPVCQAEVIK
PEGEAVARCMGGLYCHAQLRETIKHLVSRRAMDIEGLGDKLVTLFTNEKLIRDITGIYEL
DKAALLALPRMGKKSAENLLTAIEKSKKTTLPRFLYALGIRGVGETTARTLAQHFQELEP
LMKASSEELLAIKDIGPVAVENIRGFFQQKYNVKLINKLIRLGIQWSKEKVTLESRVAGK
TFVLSGSLKTLTRDEAKEKIERLGGKASSSVSKNTDYLVYGKNPGSKYGKAKELKIPIID
EKSFLELLKK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggcggttcctgaaaagattcgcaagcaggtcaagcagttacgtaaagagattaacgat
tacgattatcgatattacgttttgtcggagcctgttatccccgattcgatttatgatcag
ctttttcacgaattaaaacaattagaagaaaaatatccggaattaattgtgtctacctcg
cccacgcaaagagtaggttctgaaccacttaaaacgtttaaaactgtttttcatgaaatt
cctatgttatctctagataatgtgtttgacgaatcagggttgcgggcctttgataaaaga
attcgacagcgattgaaatcgaacggacccattgaatatacttgcgaacctaaaatggat
ggtgtggcattgagtttgctttacgaaaaaggtgaattgattcgtgccgcaacgcggggt
gacggctttgccggagaagatgttactcaaaatgcccggactatttcgacaattcctttg
caattacgtggccacgattttcctcgagtcgttcagatacggggggaagtattaatgccg
cgagaagggtttgaaaaatttaatcgtgaggcagaaaaacgaggaaaaaaagtgttcgca
aatccccgcaatgctgcttcagggagtttacgccaattggatccacgaattacagcgaaa
cgccctttaattttttatggttatttcctaggactagttagaagtagtgatttaccccaa
aaacatagcgacgttctggtgcgatttaaaaaatgggggatcccagttatttctgaaacg
atggtagtggaagatatcaaagcttgttttggttattatgaacatttacgaaaaattcgg
gacatgattcctttcgatatcgatggcgtggttgtgaaagttaattctctttctttgcaa
gaaaaattaggttttgtatcacacgcaccaaggtgggcaatcgcttataaatttccagct
caagaaaaaatgactgtggtaaacgacattgaattttatgtgggacgaacgggtgcggta
acgccagtagcgcgattggaacccgtttccgttggaagggtaacggtcagaaatgctact
ttgcataatttcaatgaacttcgtcgaaaagatattcgtgtgggtgatacggttattgta
cgccgggctggcgacgtgattcccgaaatcgttgcgcctttattagcaaaacggcccaag
aatgccaaagtaataaaaattcccactcgttgtccggtatgtcaggcggaagttataaaa
cccgaaggtgaagccgtagctcggtgtatgggcggtttatattgtcacgctcaattacga
gaaaccattaaacatcttgtttcgcgccgagcaatggatattgaggggttaggtgacaaa
ttagtcactttgtttactaatgaaaaattaattagagatataacgggcatttatgaactg
gataaagctgctcttttggctttgcctagaatgggtaaaaaatctgccgaaaatttattg
actgccattgaaaaaagtaaaaaaactactttaccacgatttttatatgcgttaggaatc
cgcggagttggtgaaacaacagctcgaactttagctcagcattttcaggaacttgaacca
ctaatgaaagcttctagtgaggagctgttagctattaaagatattggcccagtcgccgtt
gagaatattagaggtttcttccaacaaaaatataatgttaaattaatcaataaattaatc
cgacttggcattcaatggtcaaaagaaaaagtgaccttggaatcacgagttgctggaaaa
acttttgtgttatctggtagtttaaaaaccttaacacgggacgaagcaaaagaaaaaatt
gaacgtcttggtggtaaagctagtagcagtgtctctaaaaataccgattatttagtgtat
gggaaaaatcctggtagcaaatacggaaaagcaaaggaattaaaaatacctatcattgat
gaaaaatcttttttagaattgctaaaaaaataa
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