Canis lupus familiaris (dog): 490935
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Entry
490935 CDS
T01007
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X5
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
490935 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfa03041
]
490935 (EFTUD2)
Spliceosome [BR:
cfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
490935 (EFTUD2)
Complex C
U5 SnRNP specific factors
490935 (EFTUD2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
490935
NCBI-ProteinID:
XP_005624439
Ensembl:
ENSCAFG00000014065
VGNC:
40234
UniProt:
A0A8C0SJ19
A0A8I3MU66
LinkDB
All DBs
Position
9:17971321..18017098
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgagtttgggaattatattggaccagagcttgattctgat
gaagatgatgatgaattgggcagagagaccaaagatctcgatgagatggacgatgacgat
gatgacgatgatgtaggagatcatgatgaggaccaccctgggatggaggtggtgctgcat
gaggacaagaagtactaccccacagctgaggaggtgtatggccccgaggtagagaccatt
gttcaggaggaagacacccagcctctcaccgaacctattattaagccagtgaaaaccaag
aaattcactctgatggagcagacgttacctgtcacggtgtatgaaatggacttcttggca
gatctgatggataattcagagctcatcagaaatgtaaccctctgtggccatctccaccat
ggcaagacgtgtttcgtagattgtttaatagagcagactcacccggaaatcaggaagcgc
tatgaccaagatctatgttacactgacatcctcttcacagagcaggagagaggtgttggc
atcaaaagcactcctgtgacggtggtcttgccagataccaaaggaaaatcttacctcttc
aatatcatggacactccgggccacgtgaatttttctgatgaagtcacagctggcttgcgc
atctcagatggagttgtccttttcatcgatgctgctgagggcgtaatgctgaacactgag
cggctgatcaagcacgcagtgcaggagaggctggcggtcactgtgtgcatcaacaagatt
gaccggctgatcctggagctgaagctgcctccaactgatgcttattacaagctgcgtcac
atcgtagatgaggtcaatggattaataagcatgtattccactgatgagaatctgatcctt
tccccactcctgggcaacgtctgcttctccagctcccagtatagcatctgcttcacgttg
ggttcctttgccaagatctatgctgacaccttcggtgacattaactaccaggaatttgct
aaaagactctggggtgacatttacttcaaccccaaaacacgaaagttcacaaaaaaggcc
ccaaccagcagctcccagaggagcttcgtggagtttatcttggagcccctttataagatc
ctcgctcaggttgtgggtgatgtggacaccagcctccccaggactctggacgagcttggc
attcacctgaccaaggaggagctgaagctaaatatccgccccctgctcaggctggtctgc
aaaaaattctttggagagttcacaggctttgtggacatgtgtgtgcagcatatcccctct
ccaaaggtgggcgccaagcccaagattgagcatacctacactggtggtgtagattctgat
ctcggcgaggccatgagcgactgtgaccctgacggtcctctgatgtgccacactaccaag
atgtacagcacagatgatggagtccagtttcatgcctttggccgggtactgagtggcacc
atccacgctgggcagcccgtgaaggtcctgggggagaactacaccctggaagatgaggag
gactcccagatatgcactgtgggccgtctttggatctccgtagccaggtaccacattgag
gtgaaccgtgttcctgctggcaactgggttctgattgaaggtgttgatcaaccaattgta
aagacagcaactataactgaaccccggggcaatgaggaggctcagattttccggcccttg
aaattcaacaccacatctgttatcaagattgctgtggaaccagtcaatccctcagagctg
cccaagatgctggatggtctgcgcaaggtcaacaagagctatccatccctcaccacgaag
gtggaagagtctggggagcacgtgattctgggtactggggaactctacctagactgtgta
atgcacgatttgcggaagatgtactcagagatcgacatcaaggtggctgaccctgttgtc
acgttttgtgagacagtggtggaaacttcttccctcaagtgctttgctgaaacgcccaat
aaaaagaacaagattaccatgattgcagagcctcttgagaagggccttgccgaggacata
gagaatgaggtggtccagatcacgtggaacaggaagaaattgggagaattcttccagacc
aagtacgattgggatctgctggctgcacgttccatctgggctttcggccctgatgccact
ggccccaacatcttggtagatgataccctgccctctgaggtggacaaggctcttctcggc
tcagtgaaggacagcattgttcaaggtttccagtggggaaccagggaggggcccctctgt
gatgagttgattcgaaatgtcaagtttaagatcctggatgcagtggttgcccaagagccc
ctgcaccggggtgggggccaaatcatccccacagcaaggagagtcgtctattctgccttc
ctcatggccactcctcgtctgatggagccatactactttgtagaggtccaagctcctgca
gattgtgtctctgctgtgtacaccgtcctggccaggcgcagggggcatgtgactcaggat
gcacccatcccaggctcccctctctacacaatcaaagctttcatccccgccattgactct
tttggctttgagactgatctacggactcacacccaagggcaggccttttcgttatctgtc
ttccaccattggcagattgtacctggtgatcctctggacaagagcattgtcattcgcccc
ctggagccacagcctgctcctcacctggcccgggaattcatgatcaaaacccgtcgcagg
aagggcctgagtgaggatgtaagcatcagcaagttcttcgatgatcccatgttgctggag
ctcgccaagcaggatgttgtactcaattaccccatgtga
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