Corynebacterium faecale: CFAEC_05950
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Entry
CFAEC_05950 CDS
T09289
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfac
Corynebacterium faecale
Pathway
cfac03030
DNA replication
cfac03410
Base excision repair
cfac03420
Nucleotide excision repair
cfac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFAEC_05950 (ligA)
03410 Base excision repair
CFAEC_05950 (ligA)
03420 Nucleotide excision repair
CFAEC_05950 (ligA)
03430 Mismatch repair
CFAEC_05950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfac03032
]
CFAEC_05950 (ligA)
03400 DNA repair and recombination proteins [BR:
cfac03400
]
CFAEC_05950 (ligA)
Enzymes [BR:
cfac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFAEC_05950 (ligA)
DNA replication proteins [BR:
cfac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFAEC_05950 (ligA)
DNA repair and recombination proteins [BR:
cfac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFAEC_05950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFAEC_05950 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFAEC_05950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFAEC_05950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WJY92026
LinkDB
All DBs
Position
1273407..1275449
Genome browser
AA seq
680 aa
AA seq
DB search
MTDDNAQLRRTWNELAEQVRYHRDLYYNQQPEIPDADFDVLFRQLQDLEEKHPELAVPDS
PTKEIGAPIAEQSSFDNVEHLERMLSLDNVFDESELRDWLNRTPAKRYLTELKIDGLSID
LVYRNGILDRAATRGDGRVGEDITANARVISDIPHELTGTDEYPLPAVLEIRGEVFIPIG
DFADVNAQRIEDGGKPFANPRNAAAGSLRQKNTEDVKKRRLRMITHGIGYSEGFEPASQY
DAYLALAAWSLPTSTYTEAVDTADAVVDKVLYWADHRHDALHEMDGLVIKVDDIASQRAL
GSTSRAPRWAIAYKYPPEEVTTKLLDIEVSVGRTGRVTPYAMMEPVFVAGSTVSMATLHN
QSEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEMRDGTEQEFIFPELCPECGSTLAPTKA
EDADWRCPNSRSCPGQLSQRVTYLAGRGAFDIEALGEKGAQDLIRTGILIDEAALFDLTE
EDLLKSEVYTTKAGKVNASGRKLLANLTQRKNTDLWRVLVALSIRHVGPTAARALAGRYR
SMQKLIDAPVDELAETDGVGVIIAQSFKDWFEVDWHSNIVDTWAAAGVTMEDEETEQLEQ
TLEGLTIVVTGGLENFTRDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELG
LTILDEEGFVRLLERGEGES
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
gtgactgacgataacgcccaactgcgcaggacctggaatgaactggctgagcaggtccgg
tatcaccgtgacctctactacaaccagcaacccgagatccctgatgctgactttgatgtt
ctgttccggcagcttcaggacctggaggaaaagcacccggaactcgccgtgccggacagc
cccaccaaggagatcggtgcgccgatcgcggagcagtccagttttgacaatgtcgagcat
ttggaacgcatgctcagtctggacaatgtctttgatgagagcgagctccgcgactggctc
aaccgcactccggctaagcgttatctcaccgagctcaagatcgacggcctgtccattgac
ctggtgtaccggaatggcatcctcgaccgcgctgccacccgaggggatggccgggtgggc
gaggacatcaccgccaacgcccgtgtgatcagtgacatcccccatgagctgacaggcacc
gatgagtatccgctcccggctgtcctggagatccgcggtgaggtgttcattcccatcggc
gacttcgccgatgtcaatgcccagcgcatcgaggacggtggtaagcccttcgccaacccc
cgtaatgctgcggctggttcactgcgtcagaagaacaccgaggatgtgaagaaacgccgt
ctgcgcatgatcacccacggcatcgggtacagcgaggggttcgaaccggcctcccagtat
gatgcctacctggcgctcgccgcctggagcctgcccacgtcgacctacacggaggccgtc
gacaccgctgacgccgtcgtcgacaaggttttgtattgggctgaccaccgccatgatgcc
ctccacgaaatggacggcctggtgatcaaggtcgatgacatcgcgtcccagcgcgcgctc
gggtccaccagccgtgccccacgctgggcgatcgcgtacaagtatccgccggaggaggtc
accaccaagctgctggatattgaggtcagcgtgggccgcaccggtcgcgtcaccccgtac
gccatgatggaaccggtgttcgtcgccggctccacggtctccatggccaccctgcacaac
cagagcgaggttaagcggaagggggtgctcatcggtgacaccgtggtcatccgcaaggcc
ggcgaggtgatcccggaggtgctggggccggttgtggagatgcgcgatggcaccgagcag
gaattcattttcccggagttgtgcccggaatgtggatccacgctggcaccgacgaaggcg
gaggacgccgactggcgctgcccgaattcgcgcagctgcccggggcagctctcccagcgc
gtgacctacctcgcgggccgtggtgcattcgacattgaggcgctcggcgagaagggcgcg
caggacctcatccgcaccggcatcctcatcgatgaggccgccctcttcgacctcactgaa
gaggatctgctgaagtcagaggtctacaccaccaaagcaggaaaggtgaacgcctccggc
cggaaactactggccaacctcacccagcgcaagaacaccgacctgtggcgcgtcctggtc
gcgctgtcgatcaggcatgtgggcccgacggccgcgcgggcgctggccggtcggtaccgc
tccatgcagaagcttatcgacgccccggtggacgagctcgccgaaaccgacggtgtgggc
gtgatcatcgcgcaatcgttcaaggactggttcgaggtggactggcacagcaatatcgta
gacacctgggcagcggccggcgtcaccatggaggacgaggagactgagcagctcgagcag
accctcgagggactcaccattgtggtcaccggcgggctggagaacttcacccgcgactct
gtgaaggaggccatcatctcccgtggcggcaaggcgtccggatcggtatccaagaagact
gactatgtggtggtcggtgagaatgcaggttccaaagccaccaaggcggaggagctgggg
ttgaccattctggatgaggagggcttcgtccgtctcctggaacggggggaaggggaatcc
tga
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