Kaistella faecalis: LL667_11345
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Entry
LL667_11345 CDS
T08247
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfae
Kaistella faecalis
Pathway
cfae03030
DNA replication
cfae03410
Base excision repair
cfae03420
Nucleotide excision repair
cfae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LL667_11345 (ligA)
03410 Base excision repair
LL667_11345 (ligA)
03420 Nucleotide excision repair
LL667_11345 (ligA)
03430 Mismatch repair
LL667_11345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfae03032
]
LL667_11345 (ligA)
03400 DNA repair and recombination proteins [BR:
cfae03400
]
LL667_11345 (ligA)
Enzymes [BR:
cfae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LL667_11345 (ligA)
DNA replication proteins [BR:
cfae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LL667_11345 (ligA)
DNA repair and recombination proteins [BR:
cfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LL667_11345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LL667_11345 (ligA)
MMR (mismatch excision repair)
DNA ligase
LL667_11345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LL667_11345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_3
BRCT_2
zf-ribbon_3
Dna2
HMBD
Motif
Other DBs
NCBI-ProteinID:
UFK97545
LinkDB
All DBs
Position
complement(2409717..2411726)
Genome browser
AA seq
669 aa
AA seq
DB search
MSENIKQKIEELRAELHQHNYSYYTLDEPTISDFEFDLKLKELQELEEKYPEFYDCNSPT
SRVGGGVTKNFPTVQHQFRMYSLDNSYDFDDLEDWEKRVQKTLNEPVEFVAELKYDGASI
SILYENGKLKEAVTRGDGFQGDEITPNVKTISEIPMQLHGDFPERFFIRGEIYLTRKNFN
KINIRREEEGLDPFMNPRNTASGSLKIQDSAEVRKRGLSAVLYQYISGDFPVKTHWQLLQ
KTKSWGFRISEQAKLCKTLDEVKEFISFWDIERHKLGFDIDGIVVKVNDLAQQKNLGYTA
KSPRWAMAYKFKAEKVETELQAVTYQVGRTGAITPVANLKPVLLAGTVVKRASLHNEDII
KKLGLHEHDFVYVEKGGEIIPKIVGVNLEKRNPENPEIEYIKNCPECGTELVKVEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGAETIEQLYREKLVENPADFYAITKEQLLP
LERMAEKSAQNIIDGIEKSKTVPFEKVLFGIGIKHVGETVAKKLAKNFNSIDDLQKATAE
ELVQVEDIGGKIADSIIAFFQNSENILMVERLKSYGVQLERGENTNEVLSNVLENKTFLF
TGKLSLFTRDDAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQEIGTIEILDEQQ
FLDLLGNQS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacatcaagcaaaaaatagaagaactgcgtgcggaacttcatcagcacaat
tacagttattacacactggatgaacctaccatttcagattttgaatttgatctgaaattg
aaggagcttcaggagctggaagaaaaatacccagaattttacgactgcaactctcctact
tcccgcgttggcggcggagtcaccaaaaatttcccgacagttcagcaccagttcagaatg
tattcccttgataattcctacgatttcgatgatcttgaagactgggaaaaacgcgttcaa
aaaaccttgaatgaaccggttgaatttgtagctgaacttaaatatgatggagcgtcgatt
tccattttatatgaaaacggcaaactcaaggaagccgtcacccgcggtgatggttttcag
ggcgatgaaattaccccaaatgtgaagacaatttcagaaattccaatgcagcttcacggt
gatttcccggagcggttttttatacgcggtgaaatctatctgaccagaaaaaacttcaat
aaaatcaatataagacgcgaggaagaaggtttggacccatttatgaatccacgaaacacc
gcttctggaagtctgaaaattcaggactccgcggaagtgagaaagcgcggactttcagcg
gttctgtatcagtatatttccggtgatttccctgttaaaacacattggcaactgcttcag
aaaacaaaatcctggggattccgtatttcagaacaggcaaaactttgtaaaacgctggac
gaagtaaaagaattcatcagtttctgggacattgaaagacacaaactaggcttcgacatc
gacggaattgttgtaaaggttaacgatttggctcagcagaagaatttaggttataccgct
aaatccccgcgatgggcgatggcttataaattcaaagccgaaaaagtggaaaccgaacta
caggccgttacttaccaggtcggaagaacgggcgctattactcccgttgccaatctgaaa
cctgttctgctggccggaaccgttgttaaaagagcaagtctgcataatgaagatatcatc
aaaaaactgggtcttcacgaacacgattttgtgtatgttgaaaaaggaggcgaaattatt
ccgaaaatcgttggggtaaatcttgaaaaaagaaatccggaaaatccggaaattgagtac
ataaaaaactgccctgagtgtggaacagaactcgttaaagttgaagatcaggcgattcat
ttctgcccgaacgaactgcactgcccgccgcaggttgtaggtagaatgatacattacgtt
tcccgaaaggcgctgaacatcgataatcttggtgcagaaactattgaacaactttaccgc
gaaaaactcgttgaaaatcctgccgacttttatgctataaccaaagaacagcttcttccg
ctggaaagaatggcggaaaaatctgcacagaatatcattgacggaattgaaaaatctaag
accgttccttttgagaaagtattattcggaatcggaattaaacatgtgggcgaaaccgtt
gcaaagaaactggcaaagaactttaattccatagatgatcttcagaaggctactgcggaa
gaactggtacaggtagaagacataggcggtaaaatcgcggacagtatcatcgcattcttt
cagaactccgaaaatattctgatggtagagcgattgaaatcctatggcgtccagctggaa
agaggtgaaaacacgaacgaagttttaagcaacgtcctcgaaaacaagacttttctgttc
accgggaaactttctcttttcacgcgggatgatgccgaagaaatggtggaaaaacatggc
ggtaaaaatatttctgctgtttccaaaaatctcaattatcttgtcgttggcgaaaaagca
gggagcaaactgaaaaaagcacaggaaatcggaaccatagaaattctggatgagcagcag
ttcctggatttactgggaaatcaatcctaa
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