Chamaea fasciata (wrentit): 136301854
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Entry
136301854 CDS
T11360
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cfai Chamaea fasciata (wrentit)
Pathway
cfai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136301854 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfai03041
]
136301854 (EFTUD2)
Spliceosome [BR:
cfai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
136301854 (EFTUD2)
Complex C
U5 SnRNP specific factors
136301854 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
136301854
NCBI-ProteinID:
XP_066061177
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGEHDEEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggcccgagttggactcggac
gatgatgacgacgagctgggccgagagtccaaagacctggacgagctggaggatgatgat
gatgacgatgacatgggggagcacgacgaggagcaccccgggatggaggtggtgctgcac
gaggacaagaagtattaccccacagcagaggaggtctatgggcctgaggtggagaccatc
gtgcaggaggaggacacacagccactcactgagcccattattaaacccgtgaaaaccaag
aagttctccctgatggagcagacgctgccggtcactgtctacgagatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcacctgcaccac
ggcaagacatgttttgttgactgcctgattgagcagacgcacccagaaatccggaagcgc
tatgatcaggatctctgctacactgatatattgttcacagagcaggagaggggggtgggg
atcaagagcaccccagtgacgattgttctcccagacaccaaaggaaagtctttcctcttc
aacatcattgacactccaggtcatgtgaatttttctgacgaggtgacggccggccttcgc
atctcagatggcgtcgtgctcttcatcgacgcggccgagggggtgatgctgaacacggag
aggctgatcaagcacgcggtgcaggagaggctggcagtgactgtgtgcatcaacaagatc
gacagactcatcctggagctgaaactgccccccacagacgcttattacaaactcagacac
attgtagacgaagttaatggtctgatcagcatgtattccaccgacgagaacctcgtgctg
tctccccttctggggaacgtgtgtttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatttatgcagacacatatggagacatcaattaccaggagtttgca
aagcggctttggggcgacatctacttcaatccaaagacccgcaagttcaccaaaaaggcc
ccgacgagcagttcccagcgcagcttcgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacacaaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggaattaaaactgaacatccggcccctgctgcggctcgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacatcccctcc
ccgaaagtgggggccaagacaaaaattgagcacacctacaccggcggtgtcgactctgac
ctgggggaggccatgagcgagtgtgaccctgacggtcccttgatgtgccacacaaccaaa
atgtacagcactgatgatggtgtccagttccacgcctttggcagagtgctcagtggcacc
atccacgctgggcagcctgtgaaggtccttggggagaactacaccctggaagatgaggag
gattcccagatctgcactgtcggacgcctctggatttcagttgcaaggtatcacattgag
gtgaacagggttcctgctggcaactgggtgctgatcgagggcgtggaccagcccatagtg
aagacggcgactgtgacggagcctcggggcaatgaggaggctcagatcttccgtcccttg
aagttcaacaccacgtctgttatcaaaatagctgtggagccagtcaacccctcagagctc
cccaaaatgctggatggtctccgcaaagtcaacaagagctacccctcacttacaactaag
gtggaagagtctggggagcatgtgatcctgggaacaggagagctgtacctggactgtgtg
atgcatgatctgcggaagatgtattctgagattgacatcaaggtggctgatccagtggtg
acattctgtgagacagtggtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacgatgattgctgagcccctggagaagggactggcggaggacatt
gagaacgaagtggtgcagataacatggaacagaaagaagctgggtgaattcttccagacc
aaatatgactgggatttgctggcagcccgttccatctgggcctttgggccagacgccact
ggcccaaacatcctggtagatgacacactgccctcagaggtggacaagtctctgctgggc
tcagtgaaggacagcattgtgcagggcttccagtgggggaccagggaagggcccctctgt
gatgaattgatccgcaatgtgaagttcaagatcctggacgcggtgattgctcaggagccc
ttgcaccggggtggagggcagatcatccccacggcccgcagggtcgtctactccgccttc
ctcatggccacccctcgcctgatggagccctactacttcgtggaggttcaggctcctgcc
gactgcgtgtctgccgtgtacacggtgctggcccggcgcagaggccacgtgacccaggat
gctccgatcccaggctctcccctctacaccatcaaagccttcatcccagccattgattcc
tttgggtttgagacagacttgaggacccacacgcagggacaagccttctctctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccggccg
ttggagccgcagccagccccacatctggccagggagttcatgatcaagaccaggcgtagg
aagggcctgagtgaagacgtgagcatcagcaagttcttcgacgaccccatgttgctggaa
ctggccaagcaagacgtcgttctcaactaccccatgtga
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