Coprobacter fastidiosus: Cfast33896_01320
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Entry
Cfast33896_01320 CDS
T09127
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfas
Coprobacter fastidiosus
Pathway
cfas03030
DNA replication
cfas03410
Base excision repair
cfas03420
Nucleotide excision repair
cfas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cfast33896_01320 (ligA)
03410 Base excision repair
Cfast33896_01320 (ligA)
03420 Nucleotide excision repair
Cfast33896_01320 (ligA)
03430 Mismatch repair
Cfast33896_01320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfas03032
]
Cfast33896_01320 (ligA)
03400 DNA repair and recombination proteins [BR:
cfas03400
]
Cfast33896_01320 (ligA)
Enzymes [BR:
cfas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cfast33896_01320 (ligA)
DNA replication proteins [BR:
cfas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cfast33896_01320 (ligA)
DNA repair and recombination proteins [BR:
cfas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cfast33896_01320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cfast33896_01320 (ligA)
MMR (mismatch excision repair)
DNA ligase
Cfast33896_01320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cfast33896_01320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
Auto_anti-p27
zf-tcix
SpoOE-like
Motif
Other DBs
NCBI-ProteinID:
BEG61177
LinkDB
All DBs
Position
176560..178563
Genome browser
AA seq
667 aa
AA seq
DB search
MNEIKEKIEHLRQELNEHNYNYYVLNAPVISDREFDRMMEELQQLEKEYPQYSDPNSPTQ
RVGNDINKAFTQVKHKYPMLSLGNTYTIDEVASFYDRVRSGLNEDFRIVGELKYDGTSIS
LTYRHGKLLRAVTRGDGVQGDDVTENVKTIRSIPLQLRGTGYPDEFEIRGEILMPWTVFE
QLNAEREREEETLFANPRNAASGTLKLQNSAIVASRNLDAYLYYLLGEDLPSDDHYENLQ
IARSWGFKISDAMQVCHSLEEMKAFIDYWDVNRKNLPVATDGIVFKVASLRQQKNLGYTA
KSPRWAMAYKFQAEQALTRLNSVSYQVGRTGTVTPVANLDPVQLSGTVVKRASLHNDDII
QSLDLHIGDMVFVEKGGEIIPKITGVDFDARGLLIGEKVTFIKQCPECGTPLVRYEGEAA
HYCPNEMGCPPQIKGRIEHYISRRAMDIDGLGPETIDLFYRLGMVRTVADLYSLNESEIA
SLERLGEKSARNIIEAVDRSLQVPFERVLFALGIRFVGETVAKKLANSFVSIEALESATL
DDLVGVDEIGPRIAQSVRAYFENEQNRNLIKRLEEAGVQMRISEDRLSGFTDKLDGATIV
ISGTFTHHSRDEYKQMIEQHGGKNTGSVSAKTTYLLAGENMGPAKLEKARKLGIKIISEE
DFLQIIQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaataaaagagaaaatagaacatttgcgacaggaactgaatgaacataattat
aattattatgtattgaatgctcctgttatatcagaccgggaatttgaccggatgatggaa
gaactgcaacaattagaaaaagaatatcctcaatatagcgatcctaactctccgacacaa
cgggtaggcaatgatattaataaggctttcactcaggtgaagcataaatatcctatgctt
tctttgggaaacacttatacgatcgatgaagtggcgtcgttttatgaccgggtgcgttcg
ggacttaatgaagattttcgtattgtaggagaattgaaatatgacggcacgtctatatcg
cttacatatcgacatgggaaattgcttagggctgtaacgagaggcgacggtgtacaagga
gatgatgtcacggagaatgtgaagacgattcgtagtattcctttgcaattaaggggaact
ggatatccggatgaatttgagatacgaggtgaaattttaatgccttggactgtttttgaa
caattgaatgcagagagagaaagagaagaggaaactctttttgccaatcctcgaaatgcc
gcatccggtacattgaaactgcagaactctgcgattgtagcatcccgtaatttagatgct
tacttatattatcttttaggcgaagatctgccgtctgatgaccattatgaaaacttgcag
atagcacgttcttggggatttaagatttcagatgctatgcaggtgtgccattctttagaa
gaaatgaaagcatttatcgattattgggatgtaaacagaaaaaatctgcctgttgcaact
gacggtattgtttttaaagtagcttctttaaggcagcaaaagaatttgggatataccgca
aaatctcctcgttgggcgatggcatataaatttcaagcggaacaggcacttacccgattg
aattctgtctcttatcaagtgggacgtaccggaacggttaccccggttgctaatcttgat
ccggttcaattatcgggaactgtcgtaaaaagggcttcgttacataatgatgatattata
caatctcttgatttgcatatcggagatatggtatttgtagagaaaggaggagagattatt
ccgaaaattacaggagtggattttgatgcgagagggttattgataggggagaaagtgact
ttcataaaacagtgtcctgaatgtggaacgcctttggttcgttatgagggtgaagctgcg
cattattgtccgaatgagatgggatgtcctcctcagataaagggacggatagaacattat
atcagtcgtcgtgctatggacatagacggtttgggacctgaaacgatagatctgttttac
cgattgggaatggtgcggacagttgcggatttatatagtttgaatgagtcggagatcgct
tctttagaaagattgggagaaaagtcggcacgtaacattatagaggctgtcgatagatct
ttacaagtaccttttgaacgggttttgttcgcattgggaattcgttttgtaggagagaca
gtcgcgaagaagttggcgaactcttttgtttcgatagaagctttggagtcagcaacttta
gacgatttggtcggtgtcgatgaaatcggtcctcgtatagcgcagagtgtccgggcttat
tttgagaatgagcagaaccggaatttgataaaacgtttggaagaagctggggtacaaatg
agaatttctgaagatcgcctttctggttttaccgataaactcgatggagctacgattgta
atcagtggaacatttacacaccattctcgagatgagtataagcagatgatagaacagcac
ggcgggaaaaatacgggttcggtttctgctaaaacgacatatcttttggccggagagaat
atggggccggctaaacttgagaaagctcggaaattgggaataaaaattatttctgaagaa
gattttctgcagataatacaataa
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