Chlamydia felis Fe/C-56: CF0387
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Entry
CF0387 CDS
T00332
Symbol
dnlJ
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfe
Chlamydia felis Fe/C-56
Pathway
cfe03030
DNA replication
cfe03410
Base excision repair
cfe03420
Nucleotide excision repair
cfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CF0387 (dnlJ)
03410 Base excision repair
CF0387 (dnlJ)
03420 Nucleotide excision repair
CF0387 (dnlJ)
03430 Mismatch repair
CF0387 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfe03032
]
CF0387 (dnlJ)
03400 DNA repair and recombination proteins [BR:
cfe03400
]
CF0387 (dnlJ)
Enzymes [BR:
cfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CF0387 (dnlJ)
DNA replication proteins [BR:
cfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CF0387 (dnlJ)
DNA repair and recombination proteins [BR:
cfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CF0387 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CF0387 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
CF0387 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CF0387 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
BRCT_2
RNA_pol_A_CTD
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
BAE81159
UniProt:
Q254X9
LinkDB
All DBs
Position
453064..455052
Genome browser
AA seq
662 aa
AA seq
DB search
MHNMYTREQYLALCKDIEEDDYRYYVLHDPIISDYDYDMKMQKLLSIEAQHPEWRVLWSP
SMRLGDRISGSFPVVTHSHPMLSIANAYTLEELNDFFSRVEKTLGYTPTYTLELKIDGIA
VAIRYEQRVLVQALSRGNGRQGEDITTNIRTIRSLPLRLPKEAPEFLEVRGEVFFTRATF
EQINSIQRQSEKPEFANPRNAAGGTLKLLSAKEAAQRNLELSIYGAWAEENTESHYDNLM
LCQKWGFPVFGRPRQYKSVEEVVKALHEIAKIRDQLPMEIDGVVIKVDNTEDQKVLGMTA
KHYRWALAYKYAPEQGETILEDILIQVGRTGVLTPVAKLRPVFLSGSKVSRASLYNEEEI
ERKDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTKPWVMPEYCPVCHERVSRESDKVSV
RCTNSSCSAGTIEKIRFFVGREALDIEHLGEKVITKLFDLGLIHRRCDIFQITEEDLLQV
PGFKDKSIKNVLKSIEKAKSAPLERFIAALGIPYVGIGGANALAQHFLSLDAVMSASLEE
LKVIDGIGSKVAESIVDYFHQSDNVEEIQKMLSLGVNVLPYSRASASCQGKTFVITGSLE
KMTRSEAEASIRNCGGKVGSSVSKSINYLVVGKDPGSKLKKAQELQIPILNESDLLKILY
PN
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgcacaatatgtataccagggaacaatatttagctctgtgtaaagatatcgaagaagat
gattaccgctattatgttcttcatgatcctataatctcggattatgactatgatatgaaa
atgcaaaagcttctttctatagaggctcagcatcctgaatggcgggtattgtggtcaccg
tctatgcgtcttggagatcgcatctcgggaagtttccccgttgttacgcactctcacccc
atgctctctattgctaatgcctatactttagaagagcttaatgatttcttttcccgtgta
gagaaaactttagggtatacccctacatataccctagagctaaaaattgacggtattgcc
gtagctattcgttatgaacagagggtccttgttcaagctttaagtcgtgggaacggacgt
caaggagaggatattacaacaaatatccgcacaatacgctctttgcctttgcgcttacca
aaagaggctccggaatttcttgaagttcgtggagaagtgttttttacgcgagcaactttt
gaacagataaactctatacaaaggcagtcagaaaaaccggaatttgctaatccccgaaat
gctgcagggggtactctgaagcttttatctgccaaagaagctgctcaaagaaatttagag
ctctctatttatggggcttgggcagaggagaatacggaatcgcattatgacaatcttatg
ttgtgtcagaaatgggggttccctgtttttggacggccacgacaatataagagtgtagag
gaagttgtaaaagctcttcatgagatagcgaagatccgagatcagttacctatggaaatc
gacggtgtagtgatcaaagtggataacaccgaagatcaaaaagttttgggaatgacagcg
aaacattatcgctgggcgttagcgtataaatatgctcctgaacagggagaaactatttta
gaagacattctcattcaggtcggtaggacaggagtattaactcctgtggctaagttgcgt
cctgtatttttgtcggggtcgaaagtttctcgagcttctttatataatgaagaagaaatc
gaaagaaaagacattcgtattggggataccgtatacgtagaaaaaggcggggaaattatt
cctaaagttgttggagtatgtttggaaaagcgcccggagggtacgaagccctgggttatg
ccagaatactgtcccgtttgccacgaaagggtatctcgggaatccgataaggtttccgta
cgctgtacaaattcttcttgttctgcgggaactatagaaaaaattcgcttttttgtgggc
agagaagctctagatatcgagcatcttggggaaaaggtgatcacaaagctatttgatcta
ggattaattcatcgacgctgtgacatttttcaaattactgaggaggaccttcttcaagtc
ccgggtttcaaggataaatccataaaaaatgttcttaaaagtattgagaaggctaaaagt
gctccgttagagcgttttattgcagcgcttggcattccctatgtggggattggcggcgct
aatgctcttgctcaacactttctctctttggatgctgtgatgagcgcttctttagaagaa
ctgaaggttatagatggaattggatctaaggttgcggagtctatagtagactacttccat
caatcagacaatgtcgaagagatccagaaaatgctttccctaggggtgaatgtgcttcca
tactctagggcaagcgcttcttgccaagggaaaacctttgtgattactggaagtcttgaa
aaaatgaccaggtctgaagccgaggcttctattcgtaattgtggagggaaagtcggttct
tccgtatccaaaagcatcaattatctcgtcgtggggaaagatcctggatctaaattaaaa
aaggcccaggagctccaaatccccattcttaatgagagtgatttattaaaaatcctttac
ccaaactaa
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