Clostridium fermenticellae: D4Z93_02725
Help
Entry
D4Z93_02725 CDS
T06956
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfer
Clostridium fermenticellae
Pathway
cfer03030
DNA replication
cfer03410
Base excision repair
cfer03420
Nucleotide excision repair
cfer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D4Z93_02725 (ligA)
03410 Base excision repair
D4Z93_02725 (ligA)
03420 Nucleotide excision repair
D4Z93_02725 (ligA)
03430 Mismatch repair
D4Z93_02725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfer03032
]
D4Z93_02725 (ligA)
03400 DNA repair and recombination proteins [BR:
cfer03400
]
D4Z93_02725 (ligA)
Enzymes [BR:
cfer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D4Z93_02725 (ligA)
DNA replication proteins [BR:
cfer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D4Z93_02725 (ligA)
DNA repair and recombination proteins [BR:
cfer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D4Z93_02725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D4Z93_02725 (ligA)
MMR (mismatch excision repair)
DNA ligase
D4Z93_02725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D4Z93_02725 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
Nlig-Ia
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
HHH
RNA_ligase
DUF4796_N
DUF7340
Motif
Other DBs
NCBI-ProteinID:
AYD39511
UniProt:
A0A386H1D2
LinkDB
All DBs
Position
559156..561132
Genome browser
AA seq
658 aa
AA seq
DB search
MKDRYKELIKIIRYHNNKYYNLDAPEISDYEYDQLMQELKKIESKHPEWITSDSPTQKVG
GKAKREAGVIVTHNVPMLSIQDVFTKEDVIAWIRDVKKIHPDAKFSVEHKIDGLSMSLRY
KDGKLQLAETRGDGFVGEDVTLNSHEILDVKSKLDIPYEYLEIRGEVYMTHRDFEKTNEN
QEILGKKVFANPRNCAAGTLRQLDPRVTKERGLKMFVFNIQDGDKKLMLEHTKGLDYLAS
KGVTVVPHKLCEIEEEVIREIDRIGENRGILEYDIDGAVIKIEQLEYRSDFPAGSKYSAG
HIAYKYPPEEKETEILDIELTVGRTGKISPKAILKEISLCGTCVQRVTLHNQDYINEKGV
GIGAKAIIFKSGEIIPKLKEITVKPKEVFQIPNNCPACGQPVVKEEDTADIKCVNPSCPA
QLERTIQYFTSRNCMDIKGFGDNYVKALIDEGYLHNYADIYHLKEYREELIDKGIMGKDK
NTDKILAAIENSKSNDPVKLLTALGIQNVGKASSKEIMKHYSSIIELSNTTEEELIAIQD
IGDVTAKAIADFFTNPANKAIISSLRSSGVNMDVKKDEDATDKLTGLTFCITGTLPTMKR
KDAEKLVELNGGKVLSGVSKKLNYLIAGETSGSKLDKAKTLGVSIISEEEFLDMLSKK
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagatataaagagttaattaaaattataagatatcataataataaatattac
aatctggatgcaccagaaatttcagattatgaatacgatcaacttatgcaagagttgaaa
aaaatagaatcgaaacacccggaatggataacatctgattctccaactcagaaggttgga
ggtaaagcaaaacgtgaagcaggggtaattgtaacacataatgtaccaatgttgtctata
caggatgtgtttacaaaggaagatgttattgcatggatacgtgatgttaaaaaaattcat
ccagatgcaaagttttctgtagaacataagattgacggactctcgatgagtcttcgatat
aaagatggaaaattacaacttgcagagacacgaggagatggttttgttggagaagatgtt
actttaaatagtcatgaaattttagatgtaaaaagtaaattagatattccgtatgaatat
ttagaaattcgtggagaagtttatatgacacatagagattttgaaaagacaaatgaaaac
caagagatacttgggaaaaaagtttttgcaaatccaaggaactgtgctgccggaacctta
agacaattagatcccagagttacaaaagaaagaggtcttaaaatgtttgtatttaatatt
caagatggagataaaaaattgatgttagagcatacaaagggacttgattatttagcttct
aagggtgtaactgtggtaccgcataaattatgcgaaatagaagaagaggttattagagaa
attgatcgaattggtgaaaatcgtggaatattagaatatgatatagatggtgcagtcatc
aaaattgaacaattggaatacagatcagattttcctgctggaagtaagtattctgctggg
catattgcttataaatatccaccggaagaaaaggaaaccgaaattcttgatattgaatta
acagtagggcgtacaggtaagatttctccgaaagctattctaaaagaaatttctttgtgc
ggaacttgtgttcagagagttactcttcataatcaagattatatcaatgagaaaggtgtt
ggcattggagcaaaagctattattttcaaaagtggagaaattatcccaaaattgaaagag
ataactgtgaagccaaaagaagtttttcaaattcctaataattgcccggcatgtggacag
ccggttgtaaaagaagaagatacagctgatattaaatgtgttaatccaagctgtcctgca
caacttgagagaaccatccagtactttacaagtcgtaattgtatggacataaaaggattt
ggtgataattatgtaaaagctttaattgatgaaggctatctccataattatgcagatata
tatcaccttaaggaatatcgtgaagaattaatagacaaaggtataatgggtaaagataaa
aatacagataaaattcttgcggcaattgaaaattctaaatcaaatgatcctgtaaaatta
ctaacagcattgggaattcagaatgttgggaaagcatcatctaaggaaattatgaaacac
tattcgagtattatagaattatctaatactacggaagaagaactgattgcaattcaggat
atcggagatgtaacagcaaaagcaattgcagatttttttactaatcctgcaaataaagca
attataagttcattacgttcctcaggtgttaatatggatgttaaaaaagatgaggatgct
acagacaaattaacaggtttaacattttgtattacaggaaccttaccaactatgaagagg
aaagatgcagagaaacttgtagaattaaatggtggtaaagttttgtctggagtatcaaag
aagttgaattatctcattgctggagaaacttcaggttcaaagctagataaagctaaaacg
ttaggcgtaagtataatttctgaagaagaatttttagatatgttaagtaagaagtaa
DBGET
integrated database retrieval system
