Corynebacterium felinum: CFELI_05400
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Entry
CFELI_05400 CDS
T09308
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfeu
Corynebacterium felinum
Pathway
cfeu03030
DNA replication
cfeu03410
Base excision repair
cfeu03420
Nucleotide excision repair
cfeu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFELI_05400 (ligA)
03410 Base excision repair
CFELI_05400 (ligA)
03420 Nucleotide excision repair
CFELI_05400 (ligA)
03430 Mismatch repair
CFELI_05400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfeu03032
]
CFELI_05400 (ligA)
03400 DNA repair and recombination proteins [BR:
cfeu03400
]
CFELI_05400 (ligA)
Enzymes [BR:
cfeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFELI_05400 (ligA)
DNA replication proteins [BR:
cfeu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFELI_05400 (ligA)
DNA repair and recombination proteins [BR:
cfeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFELI_05400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFELI_05400 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFELI_05400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFELI_05400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
DUF4431
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WJY94708
LinkDB
All DBs
Position
1162991..1165009
Genome browser
AA seq
672 aa
AA seq
DB search
MTNVEVQVQEKWQKLAAEVIRHRELYYNQTPEITDAEFDEIYAQLEKLEKEHPELATPSS
PTQQVGAPVGSSFANVEHLERMMSLDNVFNEEELTQWLERTPAQEYITELKIDGLSLSLV
YESGTLVRAATRGDGRVGEDVTENAKVIVDIPHTLTQHPEFAIPKVVEVRGEVFIAVEDF
GLVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMICHGIGHAEGFSPTSQSQA
YEALAAWGLPVSPYTEVVTTANQVKATVEKWEKKRGEAIFEMDGLVVKVNSRAEQRGLGA
TSRAPRWAIAYKYPPEEVMTKLLDIQVGVGRTGRVTPFAVMEPVYVAGSTVAMATLHNQT
EVKRKGVLIGDTVVIRKAGEIIPEVLGPVVEKRTGEEKEFVFPATCPSCGATLAPQKEDD
LDWRCPNTRSCKAQLSARLAYVASRGAFDIEALGEKAAIDLIESEVLIDEGALFDLREED
LLRTSVFTTKKGTLNATGKKLLKNLDTAKNTDLWRVLVALSIRHVGPIAARALATRYRSL
KAMREAAVDDIAETEGVGLVIATSFKQWFEVDWHQGIVDQWAKAGVTMEEEETEQLEQTL
AGKTIVVTGTLENFSRDSAKEAIIARGGKASGSVSKKTDYVVVGENAGSKETKARELGLV
ILNEEQFVELLG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgactaatgttgaggtacaggtgcaagaaaaatggcaaaaacttgcagctgaagttatc
cgccaccgtgaactttattacaaccaaacccccgaaatcaccgatgcggaattcgacgaa
atatatgcgcagctggaaaaactggaaaaagagcacccagaactagccactccttcaagc
cccacccagcaagtaggtgcccccgttgggtcctccttcgcaaatgttgagcatctcgaa
cgcatgatgagcctcgataatgtgttcaacgaggaggaactcacccagtggctggaacgc
accccagctcaggaatacattactgagctcaaaatcgatggattgtcactgtcattggtc
tatgaatccggcaccttagtgcgcgccgccacacgcggtgatgggcgagtaggtgaggat
gtgacggaaaacgcgaaggtgatcgttgatatcccacatacattgacgcagcacccagag
tttgccatccctaaggtggtggaagtccgtggcgaagtgtttatcgccgtagaggatttc
gggttggttaatgaacagcgccaactcgaaggggggaagcctttcgcgaacccacgaaac
gcggcagcggggtcgttgcggcaaaaagatgtagaggcggtgcgccgacgcaagctgcgc
atgatttgccacggtattgggcacgcggaggggttttcgccaacatcccagtcgcaagca
tatgaagctctcgcggcgtggggtctaccagttagcccgtataccgaggttgtcacgact
gcgaatcaggtaaaagcaactgttgagaagtgggaaaagaagcgtggcgaagccatcttt
gagatggacggtcttgtggtgaaggtcaactcccgcgccgaacagcgtggattgggtgct
acctcgcgtgccccgcgttgggcgattgcctacaaatacccgccagaagaagtcatgaca
aaacttctcgacatccaagtcggcgtcggccgcactggacgtgtgactccgtttgcggtc
atggaaccggtctacgtggcaggctccaccgtagcgatggctacgctgcacaatcagaca
gaagtcaagcgtaaaggcgtgctgattggggatacggtggtgatccgtaaagctggcgag
atcattccggaggtcctcggcccggtcgtcgaaaagcgaacaggcgaggaaaaagaattc
gtattccccgccacctgcccgagctgcggggcaacgctggcgccacaaaaagaagacgac
ctcgactggcgctgccccaacactcgctcctgcaaagcccagctttccgcccgccttgcc
tatgttgcaagcaggggagcgttcgacatcgaagcgttgggcgagaaagctgcgatcgac
ctcatcgagtccgaagtgcttatcgacgagggcgcactgttcgacttaagagaagaagat
ttgctgcgcaccagcgtttttaccacgaaaaaaggaacgctgaacgcgaccgggaaaaag
ctgctgaaaaacctcgacacagcgaaaaacaccgacctgtggcgagtgctcgtggcacta
tctatccgccacgtcggccccatcgccgcacgcgcactcgccacccgctaccgctcactg
aaagcaatgcgggaagccgccgtcgacgacattgcggaaaccgaaggcgttgggcttgtg
atcgccaccagcttcaagcaatggttcgaggtggactggcaccaaggcatcgtcgaccaa
tgggcgaaagcaggggtgaccatggaggaagaagaaaccgaacagcttgagcaaacactc
gccggaaagaccatcgtggtcaccggaacgctggaaaacttcagccgcgactccgccaaa
gaagccatcattgcccgcgggggtaaagccagcggatcagtgtcgaaaaaaaccgactac
gtggtggtcggtgaaaacgcaggttcgaaggagacaaaggcccgcgaactgggccttgtc
atcctcaacgaagaacaatttgtggaactacttggctag
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