Campylobacter fetus subsp. fetus 82-40: CFF8240_1112
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Entry
CFF8240_1112 CDS
T00430
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cff
Campylobacter fetus subsp. fetus 82-40
Pathway
cff03030
DNA replication
cff03410
Base excision repair
cff03420
Nucleotide excision repair
cff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFF8240_1112 (ligA)
03410 Base excision repair
CFF8240_1112 (ligA)
03420 Nucleotide excision repair
CFF8240_1112 (ligA)
03430 Mismatch repair
CFF8240_1112 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cff03032
]
CFF8240_1112 (ligA)
03400 DNA repair and recombination proteins [BR:
cff03400
]
CFF8240_1112 (ligA)
Enzymes [BR:
cff01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFF8240_1112 (ligA)
DNA replication proteins [BR:
cff03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFF8240_1112 (ligA)
DNA repair and recombination proteins [BR:
cff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFF8240_1112 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFF8240_1112 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFF8240_1112 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFF8240_1112 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
PDZ_1
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
ABK82322
UniProt:
A0RPY7
LinkDB
All DBs
Position
complement(1105792..1107729)
Genome browser
AA seq
645 aa
AA seq
DB search
MDKNDYLKAVDSLNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSYSPTNRI
GGEILDEFKKISHIEKMWSMEDIFSDSELVAWISRGDKTDCEFFAEPKFDGASLNLLYEN
GNLISAATRGDGSVGEDVTNNAKVISSVPLQIDYKDKIEIRGEVVITKDDFELINIERSK
NSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNKHSQIMDFVRSLGFL
HDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLGYTVKFPKFMVA
YKFPATEKTARLIDILLQVGRTGVVTPVGLLDGVLIDGAFIKNVTLHNFDEIDRLNLMKN
DFVTVIRSGDVIPKITGVFKDRRDGSQSEIIRPKICPKCGNELLDEGVFIKCQNLTCKAR
VVSSIIYFASKKCMNIDGLGDAIVELLYQKNIIKDIADIYRLDELSFIGLEGFKTKKISN
LLSAINNSKTPNLDKFIASLGIEHIGEVAAKKIANNYGDRWLELTLEELLALDGFGEAMA
LSYLEFMRVNLEKIKELLEFITPKMQNLELKTNIFSGKTVVITGTLSRSRDEFKAELESY
GAKVSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESEYESLK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaatgattatttaaaagcagtcgatagtttaaatttatgggcaaaggcttat
tataccgatgattctccgatggcgtcagatgatgagtatgacaagctttataacgccgta
gttcagtttgaaaaagaaaatccggatttaaaactctcttactctcctacaaatagaatc
ggtggagagattttagatgagtttaagaagatatctcatatagaaaaaatgtggtccatg
gaggatatatttagtgatagcgagcttgttgcttggatttctagaggagataaaacggat
tgcgagttttttgccgaacctaaatttgatggagctagtttaaatttactttatgaaaac
ggaaatcttataagcgctgctacaagaggcgatggaagcgttggagaagacgtcacgaac
aatgcaaaggtcataagctcagtaccgttgcaaatagactataaagataaaatagaaata
agaggcgaagtcgtcataacaaaagatgattttgaattgataaatattgagcgtagcaaa
aattcagaaccgcctttagcaaatccgagaaacgcagcagccggaagccttagacagctt
gataatggtatagtaaaacagagaaaacttaagttttatccatggggagtcggagagaac
tctttgaaatttaataaacattctcagattatggattttgtaagaagtcttggtttttta
catgataatttttgtaaagtgatcagaggtatcgacgagttaaaaattgcttataaagag
cttttaagcgtaagagagcttaagcctattttgatggacggaatggtaatacgagtaaat
gatttatcaaaagctaatcaacttggttataccgttaaatttccaaaatttatggtagct
tataaatttcctgccactgaaaaaactgcaagattgatagatatattgctgcaagtagga
agaacaggagtcgtaactccagtgggattgcttgatggagttttgatagacggtgcgttt
ataaaaaatgtcacgcttcataattttgatgagatagatagattaaatttaatgaaaaat
gactttgttaccgtgataagaagcggagatgtcatacctaagattactggagtatttaaa
gatagaagagacggtagtcaaagtgagataattcgcccgaaaatttgccctaaatgcgga
aacgagcttttagacgaaggtgtttttataaagtgtcaaaatctaacttgcaaagctaga
gtcgtgagttctattatctatttcgcatctaaaaaatgtatgaatatagacggtcttggt
gatgctatagtagagcttttatatcaaaaaaatattattaaagatatcgctgatatttat
aggcttgatgagcttagttttataggtcttgagggatttaaaactaaaaaaatttcaaat
ttattatcggctattaataactctaaaactccaaatttagataaatttatagcgtcttta
ggcatcgaacatataggcgaagttgccgctaaaaaaatagcaaataattatggagatagg
tggcttgaattaactcttgaagagcttttagctttagacggatttggtgaagctatggct
cttagttatcttgagtttatgagagtaaatttagaaaaaataaaagaacttttagaattt
atcactccaaaaatgcaaaatttagagttaaaaacaaatatattttcaggaaaaacagta
gttataacaggtactttgtctcgctctagagatgagttcaaagcagaactagaaagttat
ggtgctaaagtatctagctcggtgtctaaaaaaacggatttcgtattatatggaaatgaa
gccggaagtaagctagaaaaagcaaatgaattaggcgtaagagcaatagatgagagtgag
tatgaaagtttaaaatga
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