Corynebacterium freiburgense: CFREI_05515
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Entry
CFREI_05515 CDS
T09215
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfg
Corynebacterium freiburgense
Pathway
cfg03030
DNA replication
cfg03410
Base excision repair
cfg03420
Nucleotide excision repair
cfg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFREI_05515 (ligA)
03410 Base excision repair
CFREI_05515 (ligA)
03420 Nucleotide excision repair
CFREI_05515 (ligA)
03430 Mismatch repair
CFREI_05515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfg03032
]
CFREI_05515 (ligA)
03400 DNA repair and recombination proteins [BR:
cfg03400
]
CFREI_05515 (ligA)
Enzymes [BR:
cfg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFREI_05515 (ligA)
DNA replication proteins [BR:
cfg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFREI_05515 (ligA)
DNA repair and recombination proteins [BR:
cfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFREI_05515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFREI_05515 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFREI_05515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFREI_05515 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WJZ02398
LinkDB
All DBs
Position
1173253..1175289
Genome browser
AA seq
678 aa
AA seq
DB search
MTAIPSDLRRQWDDLAKQIRRHNDLYYNHEPIISNEEFDALFQQLKDLEAAHPELAVPDS
PTMEVGAPPAASSSFANVEHLERMLSLDNVFDDAELSEWIARTPATHYITELKIDGLSLD
LVYQNGKLTRAATRGDGRVGEDVTENARVITGLPHNLKENSQYPVPALLEVRGEVYISIE
DFGDVNARRIEEGGKPFANPRNAAAGSLRQKNVEDVRKRKLRIICHGIGASEGFSPESLS
EAYKALKAWGLPVSDAVKVVTTAKEIKKQVAYWETNRHAPEHEMDGLVIKVDYLSEQRAL
GATSRAPRWAIAYKYPPEEVTTKLLDIRVQVGRTGRVTPQAVMEPVFLAGSTVAMATLHN
PTEVKRKGVLIGDTVVIRKAGEIIPEVLGPVVELRDGTEREYIFPELCPECGTKLAPAKE
GDVDWRCSNTQSCPGQLKRRIAHLAGRGAFDIEALGEKGAADLIESGILTDESELFQLDE
TALLKSNVYTTKAGKVNANGKKFLKNLEASKTVELWRVLVGLSIRHVGRDASQALTQRYN
SLDAMRAATVEELAETDGVGSIIAQSFKDWFEIDWHRNIVDQWAAAGVRMVDDEKEAIEQ
TLAGKTIVVTGSLEGFTRDSAKEAIVARGGKASGSVSKKTDYVVAGEKAGSKETKARELG
LTILDEVGFIKLLETGEV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactgctataccgtccgaccttcgccgccaatgggatgaccttgccaagcaaatccgc
cgccacaatgatctttattataaccatgagcctattatttccaacgaagaatttgatgca
ctgtttcagcagctcaaagacttagaagcagctcacccggaattagcagtcccggatagc
ccaaccatggaagttggcgcgcctcccgcggcgtcgtcaagctttgcaaatgttgaacac
cttgagcgaatgcttagcctcgacaatgtttttgatgatgctgagctttcggaatggatt
gcccgcacacccgcgacacactatataaccgaactgaaaatcgatggtctttccctcgac
ctggtgtatcaaaatggcaaactcacacgtgccgcaacgcgtggcgacggccgcgttggt
gaagatgtcaccgaaaacgcacgggttatcacagggctgccgcataaccttaaagaaaat
tcccaatacccggttccggcactacttgaggtccgcggtgaagtatatatttcaatagaa
gattttggcgatgtaaatgctcgccgcatcgaagaagggggcaaaccatttgcaaaccct
cgaaatgcggccgcaggatcattacgccaaaaaaacgttgaagacgttcgcaaacggaaa
ctccgcataatctgccatggcattggcgcatccgaaggtttttcacctgaaagcctgtct
gaagcatataaagcccttaaagcttgggggcttccagtatctgatgccgtaaaagtagtg
accactgcaaaagaaatcaaaaaacaggttgcatactgggaaactaaccgacatgccccc
gaacatgaaatggatggcttggttattaaggtcgattacctgtccgaacaacgcgcactc
ggagccacctcacgagcaccacgttgggcaatcgcctacaaatacccgccagaagaagta
accaccaaacttctagacattcgagtccaagtaggtcgcaccggacgcgttaccccgcag
gctgttatggaacccgtgttcctcgccggatcaaccgtcgcaatggccacactccacaac
cccaccgaggtgaaacgcaaaggcgtactcattggcgataccgtagtgatccgcaaagct
ggcgaaatcatcccagaagtcctcggcccagtagtggaactccgggacggaaccgaacgt
gaatatatattccccgaactatgtccagaatgtggtacaaaactcgccccggccaaagaa
ggtgatgttgactggcgatgcagcaatacccaatcctgtcctgggcaactcaaacgacgc
atcgcacaccttgcagggcgcggcgcctttgatatcgaagccctcggtgaaaaaggagcc
gccgacctcatcgaatccgggatcctcacggatgaatccgaactattccaactcgatgaa
acagctttactgaaatccaatgtgtatacaacaaaggccggcaaagtaaatgcaaacggt
aaaaagttcctgaaaaacttggaagcttcaaaaaccgtagaactttggcgtgtgcttgtt
gggttatctatccgacatgtaggccgcgacgcctcccaagcgctcactcaacgatacaac
tcgctcgacgccatgcgtgctgcaactgttgaagaactcgccgaaaccgacggagtaggc
agcattattgcccaatcattcaaagattggtttgaaattgattggcaccgcaatatcgtt
gaccaatgggctgcagcaggcgtccgaatggtcgacgacgaaaaggaagcaatagaacaa
acactcgcgggaaaaacgatagtggtaaccggatctctggaaggctttacccgcgattct
gcaaaagaagcaattgtagcccgtggtggcaaagcctctggttccgtatctaaaaagacc
gactatgtagtggctggagaaaaagctggctcgaaggaaacaaaagcccgagaactcgga
ctcactattctcgacgaagtcggatttataaaactcctagaaaccggcgaggtttaa
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