Colletotrichum fioriniae: CFIO01_12547
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Entry
CFIO01_12547 CDS
T04796
Name
(GenBank) ATP dependent DNA ligase domain-containing protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFIO01_12547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfj03400
]
CFIO01_12547
Enzymes [BR:
cfj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFIO01_12547
DNA repair and recombination proteins [BR:
cfj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CFIO01_12547
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
EAD7
Motif
Other DBs
NCBI-ProteinID:
EXF78369
UniProt:
A0A010RKH0
LinkDB
All DBs
AA seq
1019 aa
AA seq
DB search
MPVSFVLVCDLLEQAHKQCKTGDKNLKQRVCNWFTLHRQLIDEPETDASALLSTLLPDKR
TDRVYCIQADTLANIIGRTFGLGTSRLQELRRYKEAGRGEDLADCVERVFRETPPPICVG
KDVVTVEEIDSTLNKLAALCRFSSPVVRASQPNPSSSNRQELLGHLYLRLQAREAKWLTR
LILKNFQPVMLDPAHLYHCYDPLLPMILMVQDNFDAALSLLGNLKKDPSFLNGSGNQKRR
DLTRHLTPVLGTKVGRPFWLKGRSIKHCMKLIQGRMSCEKKMDGEYCQIHVNLSKGFKCI
QIFSKSGKDSTKDRAALHGAIRDSLNIGKPNCKFSKGCILEGELVVYSDLEKKILPFHKI
RKYVTRSGSYLNTEADSQRYDYEHLMIIYFDVLLIDGESLLGTNQNERFERLTELINRRE
GHADLVERQVIDLNDRLGAHYLRRAFAESITAREEGLVLKPDEPYFDFSESRRSFAGCPI
KLKKEYIGGFGDVGDFAVVAARYDADKAKCYGIPNLKWTHFYLGCLENKEDVERCQAQPV
FTVVHQVELKETLLKTVSTYGNPMPVSFDENDALILHLSPGVAQQKMPTIVFTEPLVFDV
RCFSFDKERNTNFWQPRFPQVSKVHFDRSFIDTISFSELQAVAEEATTTPAMEDSQEMLD
WIARLERADPRGVPVDAISQSTTGSLMTPSRTSSVRPSTSPAPNFSISPTKPLQRLPALV
EAPEPTLITPPTSSDKAADMDLIAEDKTASEAAHSPRASKRGPEGVDATPQKRPRVPSEP
GTAGRELPPPTRRPLGDISANQTALSPQASQTRPATAKHVVMDQKAASPVIPALHGPGKP
MAGSAAEIFEPRRQSVPDSSSTRVKPKCQHAGDNCLFADTMILLAPCIAYQPWVTENLLP
LHGIHEWTADPQDWTASSDTTASSFHSIIPASTSATNRSKKKRPRKICFVEHNRREATKT
LMRRLDSNPVYTTSGRREYVEVYDWRLLEDVTAMEKVLKGSKPSKEQLDPKRKWWVGLA
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtttcctttgttctcgtctgcgatcttctggagcaagcccacaaacagtgtaaa
accggcgataagaatctgaagcaacgcgtatgcaactggttcacgctgcaccgccaactt
atcgatgagcctgagacagatgcctctgctctgctctcgactctcctcccggacaagcgc
accgatcgtgtatactgtatccaggccgacacgctagccaatatcattggccgcaccttt
ggcctcggaacgtcacgtctccaagaattgcgtcgatacaaagaggctggtcgcggcgag
gatctggctgattgtgtggagagggtcttcagggaaacgcctcctcctatctgcgtaggg
aaagatgtcgtaactgtggaagaaatcgactcaaccttgaacaaactcgctgccttgtgt
aggttcagttcgcccgttgttcgggcctcacagcccaatcccagcagcagcaaccgtcaa
gaacttcttggccatctataccttcgcctgcaagcgcgagaggcgaaatggctcactcgc
ctgatactcaagaacttccagccagtgatgctggatcctgctcatctctaccattgttac
gaccccttactgcccatgatactcatggttcaggataattttgatgcggccttgtctctg
ctcggaaatctgaagaaggacccctcgttcctcaatggctcggggaaccaaaagcggaga
gatctaacgcggcacctgacgcccgtcttgggcaccaaggttggaagaccgttctggctg
aaagggcgaagcatcaagcattgcatgaagctcatccaaggccgtatgagctgcgagaag
aaaatggatggcgagtattgccagatccacgtaaatttgagcaaggggttcaaatgcatc
caaatcttttccaagagtggcaaggatagcaccaaagaccgcgctgcgttacacggagct
atacgcgactctctcaacattgggaaaccgaattgcaagttctccaagggatgtattctt
gagggcgagctcgtcgtctacagtgacttggagaagaagattctgccgttccataagata
cgcaaatacgtcacaaggtcgggcagctatctgaatacggaagcagactcgcagcgctac
gactatgaacacttaatgattatctacttcgacgttttactcatcgatggggaatctctg
cttggtaccaaccagaacgagcgcttcgagcgactgactgagttaattaaccgccgagag
ggtcatgccgatcttgtggaacgccaagtcattgacctcaatgatagactgggagcgcat
tatctacgacgagcctttgctgagtccatcactgcccgggaggaaggtctggtgctgaag
ccagacgaaccctatttcgacttcagcgagagtcgccgctcctttgctggttgccccatc
aagctgaagaaagagtatatcggaggctttggcgatgtgggcgactttgctgtggttgca
gcgcggtacgatgcagacaaggcaaagtgctacggcattcccaacctgaagtggacacac
ttctacctcggctgcctcgagaacaaggaggatgtagagaggtgtcaggcccaacctgtg
ttcacagtggttcaccaggtggaactcaaagagaccctcctcaagaccgtttcgacttac
ggaaacccgatgccagtgtcttttgacgagaatgatgccttgatccttcatctttcacca
ggcgtcgctcagcaaaagatgcccaccattgtcttcaccgagccgctggtctttgatgtc
cgttgtttctcattcgataaggagagaaacaccaacttctggcagccgaggttccctcag
gtatcaaaggtgcattttgaccgatccttcatcgacacaatctctttctccgagttgcag
gccgtggctgaagaagcaaccacgacaccggctatggaagacagccaggaaatgctggac
tggattgctagactggaaagagcagaccctcgtggtgttcctgttgatgccattagtcag
tctactacaggttctctcatgacgccatctcgtacttcttccgtccgaccttcaacttcg
ccagcgccgaatttttccataagccctaccaaacctctccaacgattaccagcattggta
gaagccccagagccaactctcatcactcctccaacttcgtcagacaaggctgcagatatg
gacctcatcgctgaagataagactgccagcgaagcagcacactcgccaagggccagcaaa
cggggtcccgagggggtggacgcgactccgcagaagcgaccaagggttccttccgaacct
ggcaccgccggtcgagagctgcctccgccaacacgtcgaccgctcggggatatcagtgcc
aatcagacggctctctctcctcaggcgtcccaaacacggccagcgacagcaaagcacgtc
gtgatggaccagaaagcggctagtccagtcattcccgctttgcatgggccgggcaaaccg
atggcaggatctgcagcagaaatatttgaaccgcgtcgtcagagcgtgccagactcctcg
tctacacgagtgaagcccaagtgccaacatgcaggcgacaattgtctatttgcagacacg
atgatcttactcgcaccctgcatcgcataccaaccctgggtcaccgaaaatctcctccct
ctgcacggcatccacgaatggaccgcggatccgcaggactggacagcatcctccgacaca
accgcatcatcgttccattccataatacccgcatctacctcagccacgaaccgctccaaa
aaaaagcggccccgaaaaatctgtttcgtcgaacacaaccgcagagaagcaacaaagacc
ctaatgagacgtctggatagcaatccggtgtacacaacgagtggcaggcgcgagtatgtt
gaggtgtatgactggcgtcttttggaagatgtcacagcaatggaaaaggtgctcaaggga
tccaagccgtccaaggagcaactggaccccaagaggaagtggtgggttggattggcttag
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