Chryseobacterium fluminis: ODZ84_19810
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Entry
ODZ84_19810 CDS
T09749
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cflu
Chryseobacterium fluminis
Pathway
cflu03030
DNA replication
cflu03410
Base excision repair
cflu03420
Nucleotide excision repair
cflu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cflu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ODZ84_19810 (ligA)
03410 Base excision repair
ODZ84_19810 (ligA)
03420 Nucleotide excision repair
ODZ84_19810 (ligA)
03430 Mismatch repair
ODZ84_19810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cflu03032
]
ODZ84_19810 (ligA)
03400 DNA repair and recombination proteins [BR:
cflu03400
]
ODZ84_19810 (ligA)
Enzymes [BR:
cflu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ODZ84_19810 (ligA)
DNA replication proteins [BR:
cflu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ODZ84_19810 (ligA)
DNA repair and recombination proteins [BR:
cflu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ODZ84_19810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ODZ84_19810 (ligA)
MMR (mismatch excision repair)
DNA ligase
ODZ84_19810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ODZ84_19810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
DUF7575
Dna2
Motif
Other DBs
NCBI-ProteinID:
UZT97407
LinkDB
All DBs
Position
complement(4326843..4328849)
Genome browser
AA seq
668 aa
AA seq
DB search
MSDNIQQKIEDLRKELHQHNENYYLLDTPTISDYDFDMLLEELRELEAKHPEFFDENSPS
VRVGGGITKVFPTIRHDFRMYSLDNSYDFDDLEDWEKRIIKTIDDPVEFVAELKYDGASI
SILYENGKLVQAVTRGDGFQGDEITSNVRTISDIPLKLKGDFPQHFFMRGEIYLTRKNFD
KINKQREEEGLDPFMNPRNTASGSLKMQDSAEVRKRALSSVLYQYISEEVPAETHWELLE
KAHGWGFKISQQAKLCRTLNEVKEFINFWDVERHNLPFEIDGIVLKVNSLKQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPILLAGTIVKRASLHNEDII
KKLDLHENDFVYVEKGGEIIPKIVGVNTEKRTDESKEIEYIKNCPECGTELIKIVDQAIH
FCPNDLHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYRERLIENPADFYALTKEQLLP
LERMAEKSAQNIISGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFSTIDELKMATVE
ELCQVEDIGTKIAVSIVEFFANSENILMLERLKSYGVQLEKGESTNEVLSHVLEGKTFLF
TGKLSLFTREAAEDMVEKHGGKNISAVSKNLNFLVVGEKAGSKLKKAQGIGTIEILDEQQ
FLDLIEKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaatattcaacaaaaaatagaagacctccgcaaagagcttcatcagcataat
gaaaactattaccttctggatacgcctaccatttcagattatgattttgatatgctgctg
gaggaactccgcgaactggaagccaaacatcctgaattctttgatgagaactcgccgagt
gtacgggtaggcggaggaataacgaaggttttcccgacgatccggcacgatttcagaatg
tattctctggacaactcttatgattttgatgatcttgaagactgggaaaaaagaatcatt
aaaaccatcgatgatcctgtggagtttgtcgctgaattaaaatatgacggggcttctatc
tctattttatatgaaaacggaaaactggtacaggccgttacccgtggagatggatttcag
ggtgatgaaattacatccaacgtacggacaatttcagatattccactgaaactgaaaggt
gattttccgcaacatttctttatgcgcggtgagatctatttaaccagaaaaaatttcgac
aaaatcaataaacaacgggaggaagaaggcttagacccatttatgaatccaagaaatacc
gcaagcggaagtttaaaaatgcaggacagtgctgaggtaaggaaaagagcactgtcatcg
gtattatatcagtatatttcggaagaggtacccgcagaaacccattgggaattattggaa
aaagctcacggctggggctttaaaatttcccagcaggctaaattatgcagaacactgaac
gaggttaaagaatttattaatttctgggatgtcgaaaggcataacctgccttttgagatt
gacggtatcgtactgaaagtaaactcattgaaacagcagagacaattgggctatactgcg
aaatccccgcgctgggccatggcttataaatttaaagcggaaaaggtggaaacggagctg
caaagtgtttcatatcaggtcggaagaaccggagccatcactcctgttgccaacctgaaa
cctatcttactggccggaaccatagtaaaaagagcctccctgcacaatgaggatatcatt
aaaaaactggatcttcatgaaaatgatttcgtgtatgtggaaaaaggcggtgaaattatc
cccaaaattgttggcgtcaataccgaaaaaagaacagacgaaagcaaagaaatcgaatat
atcaaaaactgtcctgaatgtggtacggaactgataaaaattgtagatcaggcgatccac
ttctgtccgaatgatcttcactgcccgccacaggtggtgggaagaatgattcattatgtg
tccagaaaggcattaaatattgaaaatttaggaagcgaaaccatcgaacagctgtacaga
gaacgactgattgaaaaccctgccgatttttatgccctaacgaaagagcagcttcttccc
ctggaaagaatggctgaaaaatcggcacaaaacatcatttcagggatcgaaaaatcaaaa
gagatcccttttgaaaaagtattatacggaatcggaataaaacacgtcggggaaacggtg
gctaagaaattggtaaaaaacttttcgaccatcgatgagcttaaaatggccaccgtggaa
gaactttgccaggtggaagatatcggaacaaaaatcgctgtgagtatcgttgagtttttc
gccaattccgagaatattctcatgcttgaacgattaaaatcctatggggtacagcttgaa
aaaggcgaaagcaccaatgaagttttatctcatgttttagagggaaaaacattccttttc
accggaaaactttctttattcactagggaagcagcagaagatatggtagaaaagcatggc
ggaaaaaacatctctgccgtttctaaaaaccttaacttcctggtcgtgggagaaaaggca
ggaagcaaactgaaaaaagcccagggtatcgggaccatcgaaatcctcgatgaacagcag
tttctggatctgatagaaaaacaataa
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