Corynebacterium fournieri: CFOUR_04855
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Entry
CFOUR_04855 CDS
T09290
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfou
Corynebacterium fournieri
Pathway
cfou03030
DNA replication
cfou03410
Base excision repair
cfou03420
Nucleotide excision repair
cfou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFOUR_04855 (ligA)
03410 Base excision repair
CFOUR_04855 (ligA)
03420 Nucleotide excision repair
CFOUR_04855 (ligA)
03430 Mismatch repair
CFOUR_04855 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfou03032
]
CFOUR_04855 (ligA)
03400 DNA repair and recombination proteins [BR:
cfou03400
]
CFOUR_04855 (ligA)
Enzymes [BR:
cfou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFOUR_04855 (ligA)
DNA replication proteins [BR:
cfou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFOUR_04855 (ligA)
DNA repair and recombination proteins [BR:
cfou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFOUR_04855 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFOUR_04855 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFOUR_04855 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFOUR_04855 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HMBD
DUF8512
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WJY97397
LinkDB
All DBs
Position
986438..988465
Genome browser
AA seq
675 aa
AA seq
DB search
MSEISADLHREWDELAAKVRKHRDLYYNGQPVITDGEFDELFRSLQKLEEDHPELAVPDS
PTKEVGAPATDTAFADVTHPERMMSLDNVFNEDEMREWLAKAPGPYLTELKIDGLSIDLV
YENGELTRAATRGDGTTGEDITANARVIEDIPQKLTGDAPAFLEVRGEVFIRPEDFPELN
ELRQKEGGKPFANPRNTAAGGLRQKNPEDVKKRKLHMICHGIGAREGFTPETQHEAYEAL
AKWGLPVSEYTRRAETADEVIESVQYWGEHRNDAVHEMDGLVVKVDSVAEQRALGATSRA
PRWAIAYKYPPQEVTTKLKDIEVSVGRTGRATPFAVLEPVFVSGSTVSMATLHNQHEVKR
KGVMIGDTVVVRKAGEIIPEVLGPVADLRDGTEREFVYPENCPVCGTKLAPAKEGDADWR
CPNTRSCPAQLSARLEYIASRGVFDIEALGEKGAQDLIASGVLEDEARLFDLTEEDLKKS
SVYTRKDGEVNASGKKLLANLETARHADLWRVITALSIRRVGPTAARALASRFHSMQALI
DAPTATLAETDGVGAVIAESFKEWFTVDWHQNIVDSWAAAGVTMESAEEDRAPQTLEGLT
IVATGTLEGFTRDEIKEAILSRGGKAAGSVSKKTDYVVVGENAGSKATKAEELGRPILNE
EQFVQLLEGGPDALA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaatttccgctgatctgcaccgcgaatgggacgagctggccgctaaggtccgc
aagcaccgggacctgtactacaacggccagccggtgatcaccgacggcgagttcgacgag
ctgttccgcagccttcagaagctggaggaggaccacccagagctggctgtgccggactcg
cccaccaaggaggtcggcgcacccgccaccgacaccgcgttcgcggacgtcacccatcca
gagcgcatgatgagcctggacaacgtctttaacgaagacgagatgcgcgagtggctcgcc
aaagcccccggcccgtacttgacggagctgaagatcgacgggctgtccatcgacctcgtc
tacgaaaacggcgagttgacccgcgctgccacccgcggcgacggcaccaccggcgaggac
atcaccgccaacgcgcgggtgatcgaggacatcccgcagaagctcaccggcgacgctccg
gcgtttttagaggtccgcggcgaggtgttcatccgaccagaggacttcccggagcttaac
gagctgcgccaaaaggagggcggcaagccgtttgccaacccgcgcaacaccgccgctggc
ggcctgaggcagaagaatccggaggacgtgaagaagcgcaagctgcacatgatctgccac
ggcatcggcgcgcgcgagggtttcacccctgaaacccagcacgaggcctacgaggcgttg
gcgaagtggggactgccggtgagcgagtacacgcgccgggcggaaacggccgacgaggtg
atcgagtccgtgcagtactggggcgagcatcgcaacgacgcagtccacgagatggatggc
ctggtggtcaaggtcgactccgtggccgagcagcgcgcgctgggcgcaacctcgcgcgca
ccgcgctgggctatcgcctacaagtacccgccgcaggaggtgaccacgaagctgaaggac
attgaggtctcggtggggcgcaccggccgcgccaccccgttcgcggtgctggaaccggtg
ttcgtctccggctcgacggtgtccatggcaacgctgcacaaccagcacgaggtcaagcgc
aagggggtgatgatcggcgacacggtggtggtgcgcaaagcaggcgagatcatcccggag
gtgctcgggcctgtcgcggatcttcgcgacggcaccgagcgcgagttcgtctaccccgaa
aactgcccggtgtgcggcacgaagctcgcccccgcgaaggaaggcgacgcggattggcgt
tgcccgaacacccgctcgtgcccggcgcagctgtcggcacggttggagtacatcgcctcg
cgcggcgtgttcgacattgaggcgctcggggagaagggcgcgcaggacctcatcgcctcg
ggcgtgctggaggacgaggcccgcctgttcgacctcaccgaggaggacctgaaaaagtcc
agcgtgtacacccgcaaggacggcgaggtcaacgcctccggcaagaagcttttggccaac
cttgaaaccgcccgtcacgcggatttgtggcgcgtgatcaccgcgctgtccatccgccgc
gtcggtcccaccgcggcgcgcgcgctcgcctcgcgcttccactcgatgcaggcgcttatc
gacgcacctacggccaccctcgccgaaaccgacggcgtcggcgcagtgatcgccgaaagc
ttcaaggagtggttcaccgtggactggcaccaaaacatcgtggatagctgggccgcggcc
ggtgtgaccatggagtcggcggaagaggaccgcgccccgcaaaccctggaggggctgacc
attgtcgccaccggcacgctggagggcttcacccgcgatgagatcaaagaagcgatcctc
tcgcgcggcggcaaggcggccggttccgtgtcgaagaagaccgactacgtcgtcgtcgga
gaaaacgccggctccaaggccacgaaggcggaggagctgggccggccgatccttaacgag
gagcagtttgtgcagctactcgagggcgggccggacgcgctcgcataa
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integrated database retrieval system
