Chlamydia trachomatis F/SW4: FSW4_1471
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Entry
FSW4_1471 CDS
T02165
Symbol
dnlJ
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfs
Chlamydia trachomatis F/SW4
Pathway
cfs03030
DNA replication
cfs03410
Base excision repair
cfs03420
Nucleotide excision repair
cfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSW4_1471 (dnlJ)
03410 Base excision repair
FSW4_1471 (dnlJ)
03420 Nucleotide excision repair
FSW4_1471 (dnlJ)
03430 Mismatch repair
FSW4_1471 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfs03032
]
FSW4_1471 (dnlJ)
03400 DNA repair and recombination proteins [BR:
cfs03400
]
FSW4_1471 (dnlJ)
Enzymes [BR:
cfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FSW4_1471 (dnlJ)
DNA replication proteins [BR:
cfs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FSW4_1471 (dnlJ)
DNA repair and recombination proteins [BR:
cfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FSW4_1471 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSW4_1471 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
FSW4_1471 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FSW4_1471 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
HHH_3
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Transposase_20
BRCT_2
Zn_ribbon_RlmA
Motif
Other DBs
NCBI-ProteinID:
CCE13311
LinkDB
All DBs
Position
164266..166257
Genome browser
AA seq
663 aa
AA seq
DB search
MGAVSRDDYIALCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPT
MYLGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPGYSLELKIDGIAV
AIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEAFE
ELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGLITDQKKRSHFENLQL
CSQWGFFVAGMPKQCRSRQEVVERIREIEEMRAALPMAIDGVVIKVDNIAHQDRLGLTSK
HYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQDEIE
KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVCHEPVVKEKVSVRCI
NPLCSGGMLEKICFFASKSALNIDHLGEKVVTKLFEVGLISSCSDIFALTEEDLKQVPGF
KDRSIQNLLASIAGAKKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMS
IEGIGPKVAASIVAFFSKHENREEIRRMQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQM
TRTQAEERIRSLGGKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAK
SVS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgggtgctgtatctcgagatgattatattgctttatgcacagaattagtggaacatgac
cgatgctattatgtgctcaatcaaccgacgatttctgattacagctatgatgtgaaaatg
cgagagcttcaagaaatagaagttcagcatccggaatggaaggtttcatggtctcctacc
atgtatttgggggatcgtccttcaggacagtttcctgtggttcctcattctagtcccatg
ttgtctatagcgaatgtatactcattgcaagagctagaggaatttttttcccgtacagaa
aaattattggggtactctcctggatattctttagaactcaaaattgatggaattgctgtc
gccattcggtatgagaagcgattgtttgctcaagctttgagtcgggggaatggggtaaaa
ggagaagatattacagctaatgtcagtactatacgctctttacctatgagactccctcaa
gaggctcccgaggatctagaagtgcgaggagaagtgtttctttcatatgaagcgtttgaa
gagctcaatgcttgtcaacgggaacaagggaaactggaatttgctaatcctcgtaatgca
gctggaggaactcttaagcttttatcttctaaggaagctgctaagcgtaaattagacttg
tctgtttatgggttgatcacagatcaaaaaaaacgctcacattttgaaaatcttcagtta
tgctctcaatggggatttttcgttgcagggatgccgaaacaatgccgttcgagacaagag
gtggtagaacgtattcgagagatagaggagatgcgcgcagcgctcccgatggctatcgat
ggagtcgtcattaaagtagacaatattgcacaccaggatcggctaggtttgacgagcaaa
cattatcgttgggcgatagcttataaatatgctccggaaagagcagaaacgattttggag
gatattgtcgttcaagtagggaaaacgggtattcttactccggttgccgagttagctcct
gtttttttatctgggagccgcgtgtccagagcatccttatacaaccaggatgagattgaa
aaaaaagatattcgcatcggagattcggtgtatgtcgaaaaaggaggagaggttattccc
aaaattgttgggattaatttggctaagcgttcattagagagcgagccttggaaaatgcca
agcctgtgtcctgtatgtcatgaacctgttgttaaagagaaggtgtcggtgcgttgtatc
aatccactttgttcaggggggatgctagaaaagatctgtttctttgcaagtaagagcgct
ttaaacatagatcatttgggagagaaggtcgtaactaaattattcgaagtaggtctcatt
agttcttgttcagatatatttgctcttacagaagaagatttgaaacaggtccctgggttt
aaagatcgttctatacagaatttattggcaagcattgccggagccaaaaaggtggcatta
gatcggcttttaacggctctttctattccttttgtggggagctctggtgccatagctctg
gcagaccacttcggaactctggacaaagtaatcgaagcttctttagatgagctgatgtct
atagaggggattggtcctaaggtagctgcatcgatcgtcgcgttcttctcgaaacatgag
aatagagaggaaattcgtcggatgcaagagctaggagttcaggttctttctaagcaatcc
gataaagaggctcctttacaaggaaaagtgtttgttcttacggggactctccaacagatg
acgagaacgcaagcagaggagcgtatccgctccctaggggggaaagtgagctcttcggta
tcgaagagcacatatgccgtcatagcgggtagcgaagctgggggtaaattgaaaaaagct
caagatttaggtttaagtatttggaacgagagcgaattattaagaattcttgacgcaaaa
tcggtctcctga
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integrated database retrieval system
