Collimonas fungivorans: CFU_1295
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Entry
CFU_1295 CDS
T01583
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03030
DNA replication
cfu03410
Base excision repair
cfu03420
Nucleotide excision repair
cfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFU_1295 (lig)
03410 Base excision repair
CFU_1295 (lig)
03420 Nucleotide excision repair
CFU_1295 (lig)
03430 Mismatch repair
CFU_1295 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfu03032
]
CFU_1295 (lig)
03400 DNA repair and recombination proteins [BR:
cfu03400
]
CFU_1295 (lig)
Enzymes [BR:
cfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFU_1295 (lig)
DNA replication proteins [BR:
cfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFU_1295 (lig)
DNA repair and recombination proteins [BR:
cfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFU_1295 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFU_1295 (lig)
MMR (mismatch excision repair)
DNA ligase
CFU_1295 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFU_1295 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_5
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AEK61127
UniProt:
G0AB02
LinkDB
All DBs
Position
1519882..1521966
Genome browser
AA seq
694 aa
AA seq
DB search
MSPISSQAGGPGNTPDAAEWRSRAAWLAAELNRHNHSYYVLDNPSIPDAEYDQLFRELQA
LEQAHPELNTPDSPTQRVGAAPLPLFEQVTHSIPMLSLGNGFEDNDIIEFDRRVRDGLDT
QADSDIEYAAELKFDGLAINLRYEDGVLVQAATRGDGTTGENVTSNIRTVRAIPLRLHTE
HPPKVLDVRGEVLMFKDDFAKLNARQREAEMKEFANPRNAAAGSLRQLDSRITAQRTLRF
FAYGIGMLEGADMPPSHSALLDWYSQLGLPVCKERGVVKGASGLLDFFRDIGGKRPQLPY
EIDGVVYKVNRLLQQQTLGFVSRAPRFALAHKFPAEEATTQVLGIEVQIGRTGAVTPVAR
LAPVFVGGVTVTNATLHNEDEVRRKDIHIGDTVIVRRAGDVIPEVVSFVPELRPADAQSF
VMPSECPICGSAIVKLEDEAIARCSGGWVKCAAQRKGGLQHFASRRAMDIEGLGDQLIEQ
LVDRDLIHTAADLYKLGLVKLAALDRMADKSAQNVMSALEKSKSTTLGRFIYALGIRHVG
EATAKELAAHFGNIDGLLQASEEQLLEVADIGPVVARSLLAFFADPLNRELVEQLRAAGI
HWPENLPAAGGSKFLLGKTFVLTGSLPTLTRDAAAAMIEAAGGKVTGSVSKKTSYVVAGA
EAGSKLTKAEELNIPILDEDGLRTLLEESDHDQD
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtccccaatatcatcacaagcaggcggcccgggaaacactcccgatgccgccgaatgg
cgctcgcgcgccgcctggctggcagccgagctgaaccgccacaatcactcctattacgtg
ctcgacaacccctcgattccggatgctgaatacgatcagctgttccgtgaattgcaggcg
ctggagcaggcccatccggaactcaatacgccggattcgccgactcagcgcgtaggcgcc
gcaccgttgccgctgttcgagcaggtgacgcattcgatacccatgctgtccctgggcaac
ggctttgaagacaacgacatcatcgagttcgaccgccgtgtcagggatggcctcgacacc
caggccgacagcgacatcgagtacgccgccgagttgaagttcgacggcctggcgatcaac
ctgcgctacgaagacggcgtgctggtgcaggccgccactcgcggcgacggcaccaccggc
gaaaacgtcaccagcaacatccgcaccgtgcgcgcgattccgctgcggctgcataccgag
catccgcccaaggtattggacgtgcgtggcgaagtgctgatgttcaaggacgatttcgcc
aagctcaacgcccgccagcgcgaggccgagatgaaagaattcgccaatccgcgcaatgcc
gccgccggcagtttgcgccagctcgattcgcgcatcacggcgcagcgcaccttgcgcttt
ttcgcctacggcatcggcatgctggaaggcgccgacatgccgccgtcgcattcggcgctg
ctggactggtacagtcagctcgggctgccggtctgcaaggaacgcggtgtcgtcaagggc
gccagcggcctgctggattttttccgcgatatcggcggcaagcgtccgcaactgccttac
gaaatcgacggcgtggtgtacaaggtgaatcgcctgctgcagcagcagaccttgggattc
gtatcgcgcgcgccgcgttttgcgctggcgcataaattcccggcggaagaagccaccacc
caggtgctgggcatcgaagtgcagatcggccgcaccggcgctgtcactccggtggcgcgg
ctggcgccggtgtttgtcggcggcgtcacggtgaccaacgccaccctgcacaatgaagac
gaagtgcggcgcaaggatatccatatcggcgacaccgtgatcgtgcgccgcgccggcgac
gtgatcccggaagtggtttcctttgtgccggaactgcggccggcggacgcacagtcgttt
gtcatgccgagcgagtgtccgatttgcggctctgccatcgtcaagctggaagatgaggct
atcgcgcgctgctcgggcggctgggtcaagtgcgcggcacaacgcaagggcggcttgcag
cattttgcatcgcgccgggcgatggatatcgaaggcctgggcgaccagttgatcgaacag
ttggtcgatcgcgacctcatccatacggcggccgacctgtacaagctgggcctggtgaaa
ctggcggcgctggaccgcatggccgacaaatcggcgcagaatgtcatgtctgcgctggaa
aaatcgaaatcgaccacgctgggccgtttcatttatgcgctcggcatccgccatgtgggc
gaggcaacggcgaaagagctggcggcgcacttcggcaacatcgacggtttattgcaggct
tccgaggaacagctgctggaagttgccgatatcggccctgtggtggcacgatcattgctc
gctttctttgccgatccgctgaaccgggagctggtcgaacagttgcgggcagccggaatc
cactggccggagaacttgccggctgccggcgggtccaagttcttgttaggcaagaccttc
gtgctgaccggcagcctgccgaccctgacgcgcgatgccgccgctgccatgattgaggcg
gctggcggtaaagtgacaggatcggtttccaagaagaccagttatgtggtcgcgggcgct
gaagccggcagcaaactgactaaagcggaagaactgaacatccctatcctggatgaggac
ggactccgcactcttttagaagaaagcgatcatgaccaagattag
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