Choristoneura fumiferana (eastern spruce budworm): 141431815
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Entry
141431815 CDS
T11020
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141431815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141431815
Spliceosome [BR:
cfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
141431815
Complex C
U5 SnRNP specific factors
141431815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
FANCL_d3
TniB
Ras
Motif
Other DBs
NCBI-GeneID:
141431815
NCBI-ProteinID:
XP_073949148
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All DBs
Position
Z:3132429..3156847
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AA seq
974 aa
AA seq
DB search
MDGDLYDEFGNYIGPDLDSDSDDEHSVYDNRDGDEEGMDDDEDPDVEPEAAPMSVVLHED
KRYYPQAVEVYGPDVETVVQEEDTQALDKPLIEPVKHKKFQMQEQELPETTYDMEYLADM
LDNTNLMRNVTLMGHLHNGKTSFVDCLIRQTHPSTINNETTIPMRYTDTLFVEQERGVSI
KAMPVTLMLKNIKGKSHLLNIMDTPGHVNFSDEVTSALRISDGAVLFVDAAEGIMLNTER
LLRHAVQERVPLTICINKLDRLMLELKLPPADAYYKLRHIVDELNSMIETHQPQDNPDEP
ATVFSPLLGNVCFASSLYDVCFTLESFAAMYAAAHPDAGLRAPEMAAWLWGDVYFNAKTR
RFTKKQPHSSAQRSFVEFILEPLYKIFAQVVGDVDDSLPGVLAELDIKLSKQESKLNVRP
LLRLVCSRLFGDFRGFVEMVVRHVPSPLDAAPRKVAHTYRGSEGALCEDMRACDQSGRLV
AHTTKMYPTDDCSFFLVLARIMSGTLYAGQSVRVLGENYSTQDEEDSRIMNVGRLWIYEA
RYKVELNRVPAGCWALVEGIDQPIVKTCTVVSAEETAELHTFKPLRFNTQAVVKIAVEPV
NPSELPKMLDGLRKVNKSYPLLSTRVEESGEHVVLGTGELYLDCVMHDLRDMYSEIDIKV
ADPVVSFCETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAGAVCVSWDRRRLG
EFFQNKYDWDLLAARSIWAFGPSTTGPNILVDDTLPSEVDKHLLAAVKDSIVQGFQWGTR
EGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVE
VQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFVPAIDSFGFETDLRTHTQGQA
FCLQVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMVKTRRRKGLSEDVSINKFFDD
PMLLELARQDVQFN
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgatttatacgacgaatttggaaactacatcgggccagatttagattcagac
tctgatgatgagcacagcgtttacgataatcgcgatggggacgaagagggcatggatgac
gacgaggatcccgacgtggagcccgaggcggcgccaatgtccgtcgtgctgcatgaggac
aaacgatactatccgcaagcagtagaagtgtacgggcccgatgttgagactgtggtccag
gaagaagacacccaagccctggacaagcctctgatagagcccgtcaagcacaagaagttc
cagatgcaagagcaggaactcccggagaccacatatgatatggagtacctcgctgacatg
cttgataatactaacttgatgagaaatgtcacgttgatggggcatctgcataatggcaag
acatcctttgtggactgcctcatacggcaaacgcatccgagcaccataaacaacgaaacc
acaatacccatgcgttacactgatacactgtttgtggagcaggaaagaggggtctctata
aaagccatgccagttaccctgatgctgaagaacataaaggggaagtctcatcttctgaac
atcatggacacaccggggcacgtcaacttcagtgatgaggtcacatctgctttaaggata
tctgatggcgcggtgctattcgtggacgcagcggaaggcatcatgctcaacactgagaga
ttgttgcgtcacgctgtgcaggaacgtgtgccgcttactatatgcatcaataagcttgac
cggttgatgctcgagctgaaactgccgccggcggacgcctactacaagcttcggcatata
gtggatgagttgaactcaatgatagagacccaccagccccaggacaaccccgacgagccg
gccaccgtcttctctccgctgctgggcaacgtgtgcttcgcatcgtccctctacgacgtc
tgtttcacgctggagtcgttcgccgctatgtacgcggcggcgcacccggacgcggggctc
cgcgccccagagatggccgcctggctctggggtgacgtgtatttcaacgcgaagacccga
aggttcaccaagaagcagccgcattcttccgcgcagaggagcttcgtcgagttcatactg
gagccgctttataagatcttcgcgcaggtggtgggcgacgtcgacgacagtctgccgggc
gtgctggccgagttggacataaagctgagcaagcaggagtccaaactgaacgtgcggcca
ctgctgaggctggtctgcagccggctcttcggggacttccgcggtttcgtggagatggtg
gtgcgccacgtcccctcccccctggacgcggcgccgcgcaaggtcgcgcacacttaccgc
ggcagcgagggcgcgctctgcgaagacatgcgcgcctgcgaccagagcggccgcctggtg
gcgcacaccactaagatgtaccccactgacgactgcagcttcttcctggtgctggcacgc
atcatgtccgggactctgtacgcggggcagtccgtccgggtgttgggggagaactacagc
acccaggacgaagaagactccaggatcatgaacgtcggccggctgtggatttacgaggcg
cggtataaggtggaactgaaccgggtgccggccggctgctgggccctggtggagggtatc
gaccagccgatagtgaagacatgcaccgtggtgtccgcggaggagacggcagagctccac
acgttcaaaccgctccgtttcaacacgcaggctgtggtcaagatcgccgtagagccggtc
aatccgtcggagctgccgaagatgctcgatggtcttaggaaggtgaacaaatcgtacccg
cttctgtcgacacgcgtcgaggagagcggcgagcacgtggtactgggcacgggcgagtta
tatctcgactgcgttatgcacgatcttagagatatgtactcggagatcgacatcaaagtc
gctgatccggtggtgtccttctgcgagacggtggtagagacgtcctcgctgaaatgcttc
gcggagacgcccaacaagcggaacaagctcacaatgatcgcggagcccctggagcgaggg
ctggccgaggacatagaggcgggggcggtctgcgtcagctgggaccggcggaggctcggg
gagttcttccagaacaaatacgactgggatttgctcgcggcgcggtcaatctgggccttc
gggccgtccacgaccggacccaacatcctggtggacgacacgctgccctctgaagtggac
aagcatctgttggcggccgtcaaagacagcatcgtgcaaggcttccagtggggcacgcgc
gagggcccgctctgcgaggagccaatcaggaacgtcaagttcaagatcctggacgcagtt
atagcccaagagccgctgcaccgcggcggcggacagatcattcccaccgcccgacgagtc
gcgtattcggcgttcctcatggcgacgccgcggctgatggagccctatttgttcgtggag
gtgcaggcgccggcggactgcgtctccgccgtttacacggtgctcgccaagcggagaggc
cacgtgacccaggacgcgccggtcccgggctctcccctctacacgatcaaggcgttcgtg
ccggcgatcgactcgttcggcttcgaaacggacctgcgcacgcacacgcagggccaggcg
ttctgtctgcaggtgttccaccactggcagatcgtgcccggggacccgctcgacaagagt
atcgtgatcaggccgttggagccgcaaccggcgacgcacctggcgcgcgagttcatggtc
aagacgcgccggcgcaaagggctcagcgaggacgtgtccatcaacaagttcttcgacgat
cctatgttgttggagctggcgcggcaagacgtgcagttcaactag
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