Choristoneura fumiferana (eastern spruce budworm): 141433971
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Entry
141433971 CDS
T11020
Symbol
Cad99C
Name
(RefSeq) cadherin 99C
KO
K16500
protocadherin-15
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cfum03037
]
141433971 (Cad99C)
04515 Cell adhesion molecules [BR:
cfum04515
]
141433971 (Cad99C)
Cilium and associated proteins [BR:
cfum03037
]
Primary cilia and associated proteins
USH complex and associated proteins
141433971 (Cad99C)
Cell adhesion molecules [BR:
cfum04515
]
Cadherins
Protocadherins
141433971 (Cad99C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Fibulin_C
PepSY
He_PIG
Big_9
PCDH15_12th
Motif
Other DBs
NCBI-GeneID:
141433971
NCBI-ProteinID:
XP_073952248
LinkDB
All DBs
Position
13:complement(7499196..7669805)
Genome browser
AA seq
1612 aa
AA seq
DB search
MARWVALIQHGQSSIWLLVFCLLHLAQATPGPCDVETGQASIIVDIEESRGNQVNQSTVP
AELPIVGEPDVDIVLSTVFPKGPTLFQLDGKRLQLLQPLDRDADNLSHMVFQLVCQVKAT
KRRRTTTVIVRVSDINDNAPAFQGVPYEANVSELVPVGTTVFDKIRAVDLDAGVNGLSEY
FIVPGDNKTLEASNAADGYGFFSIPLPHQGVVTVNRSLDYERTQQYLVTIVASDRARDTK
KRMSSTTTLTVNVQDDDDQDPSFIYKGCSLHDGACINPEYSSYVNSGVLAGILSIEPEKI
QAVDMDTLDARIRYSIESGEPDSWATYFTIDQHTGAVRQLKPVDTSIAKKFQLVIKAEEV
SEARRYTTAKLTVTVRPVDASPPVVEASSDEGSVEENSPKGTKVLDAKGEPIRLSVSDPD
LGPGDLIPKYTYELTTNFFDIDKNGILIVNDDRLDRDPPNPGKFRFQVVAREANGGAASA
PLSLAVQLLDQNDNAPVIPKTQPINVPATLEPTAVYKVEATDIDEGENARITYSIYHISN
NGGNKFTIDPDTGVISSTGHLQAGEQYSVTIRATDAKGLSSQGIVELSVAPGPNTRPPQF
SARDYHAPVSEGAAINSTVTTVTAKDPENEPVTYSIVSGNDLRQFAVGATTGIITVIRSL
DREVLTRYQLMVKAEDPGKLSSTATVNIKVTDINDNNPEFDEDSYQFHVKEGLTGEFVGY
VHATDTDEGINAMISYNLPPHLPFSIDNGTGMISTKTELDYEHTKEYAFVVTATDGAIDK
RFGTASVTVQVQDVPDEAPVFPQTLHSVHVPENSANYPVIKVQAEDPDTMPEITYTILRG
DTDLFSIDRKSGMIRTLRELDREMTARHELIVGTEENLEDGSGSTTTVEVLVDDRNDNAP
IFTSVVRPITIEDSSSIGSLVQTVTAVDSDSTAPNNRVRYKLVGRGKASKYFNVEPDTGA
VRVRDDLRKETDSEYTVDVQAYDQGEPMMSSVTSLTVYVSHSATVPPDVGLGFADTVYTE
HVAENSPNGTLVRILPLLNKREHSPNTPLKCKLTDSSQKGVFYVRLTEDRDCAIYLNTSS
LDYETLNGYSLEIQLESIKGLINPESSKANVKVHVTDVNDNSPVFVFPEQSTIAAAKGKY
FAIVTKDTPLGTNVVQVKAKDKDSGEFGRIEYHKNSWTKAAEEYFSLETDTGVITNIKTF
ENVPPDVLPFKFSVTARDNPNSSQDYNIARTSVVINLLQKDNQLILEVSNLNNDALRRRS
RSLLAAIEEKSGLIAGLEKVTDRHYLGVNGTLESDPKGTDVWLYLLDPSTGQILTRDSET
VQKAIESGINKAVSARLQSQVSQVRPPLQAKEQPRKPQVAAAPLATALPAALLALAALVL
VAASAATIYICASWSRYKRHKEQAVQQYGTLSMSMAPPRPNSGYESSEDDPAPRYETQVL
NMAVDDADLQLDFSPNNHAFNIHSVQYLSKDNGERSPTLSETATTARASSVNENGTLNNH
HQFDNIANNSTFARNTQTLNRRAPNNHALNNALGTLPRVNNNNVGGGLLATTLGRKINGG
NNHKKKASQPIMAYDEIPGLQRASDNDNVTFGKRNFTGYTYDQSPVETTTEL
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggtgggtcgcgctaatccagcatgggcaatcatcaatttggctgctcgtcttc
tgcctattacatctggcacaagcgacacccggtccgtgtgatgtggagaccggccaagcc
agcatcattgtcgatatagaagagagcagaggcaatcaagtaaaccaaagcacagtacca
gcggagttaccaatcgtcggcgagccagatgttgacatcgtcctgtcaacggtgttcccc
aagggaccgacgctcttccagctcgacggcaaacgtttgcagctgttgcagccgctagac
cgggatgcggacaatctgtcgcatatggtgtttcagttggtctgccaagtgaaagcgacg
aagcgtcggcgcactaccacggtgatagtccgggtttcggacatcaacgacaatgcgccc
gcgttccaaggagtgccgtatgaagccaacgtgtcagagcttgtgccagtaggtacgaca
gtcttcgacaaaatacgagctgtagaccttgacgcgggcgtcaatggtctttccgagtat
ttcatagtaccaggagacaataaaacgttggaagccagcaatgcggccgatggatatggc
ttcttcagtataccactcccgcatcaaggggttgtgactgtcaacaggagtttggattac
gagcgcactcagcagtatctagtcactattgtagcttctgatcgtgcgcgcgataccaaa
aaacgtatgtcgagtaccactacgttgacagtaaatgttcaagatgacgacgaccaggat
ccgtctttcatctacaagggatgctcgctgcatgatggtgcctgcatcaatccagagtac
tccagctatgtaaacagtggcgtcctagctggcatactatcgattgaacctgagaaaata
caagcggtcgatatggacaccctcgacgcccggatccggtacagcatagagtccggagaa
cctgactcctgggctacctacttcactatagaccagcacacgggggcagtgaggcagctc
aaaccggttgataccagtattgctaagaagttccaactggtcataaaggctgaagaagta
tcagaagctcgtcggtacaccacggcgaagttaaccgtgacagtacggccggtcgacgcg
agccctccggtggtggaagcctcgtctgatgaaggcagcgtggaggagaactcgcctaaa
ggaaccaaagtgctcgacgcgaagggagagcctatacggctcagcgtttcagatcctgat
ttgggccccggtgacctcataccaaagtatacgtacgaattaacgactaacttcttcgac
atcgacaagaatggcatccttatagtcaacgatgatagactggacagggacccgccgaac
ccaggcaaatttagattccaagttgtggccagagaagcaaacggcggcgctgcgtcggct
ccgctttccttagctgttcagctgctggaccaaaatgacaatgctccagtcatacctaaa
actcagcccatcaatgtacccgctaccttggagcctacagctgtttacaaggtcgaggcg
acggatatagatgaaggcgaaaatgcgcgtattacgtacagtatttaccacatctctaat
aacggagggaacaaattcactatcgatccggacactggagttatctcaagcactggccac
ttgcaagctggtgagcaatacagcgtcacgatccgcgccacagacgctaaggggctcagt
tcgcaaggcatcgtggagctatctgtcgctccgggacctaacacgcggccaccgcagttc
tcagcgagagactaccacgcacctgtatctgaaggagccgctatcaactctactgtcacc
actgtcactgccaaggatccagagaacgagccagtgacgtactccatagtgtccgggaac
gatttgcgccagttcgccgtcggggcaactaccgggatcattaccgttatcagaagtctg
gacagggaggtgcttacgcggtatcaattgatggtgaaagccgaagatcccggaaagttg
tccagtacggccacggtcaatatcaaggtcactgacatcaacgacaataatccagagttt
gatgaagactcttaccagttccatgttaaagaaggtttgacgggagagtttgtaggctac
gtccacgcgactgacacagacgaaggtatcaacgcgatgattagttacaatctaccgcct
cacctcccctttagtatcgacaacggaacgggaatgatcagcaccaagactgaactggac
tatgagcatactaaggaatacgcgttcgtagtgacggcgacggacggcgccatagacaag
cgtttcggcaccgcgtcagtcactgtccaggtgcaagatgtgccagacgaggcgcctgtg
ttcccgcagacgctacactctgttcatgtgcccgaaaattctgctaactaccccgttatc
aaggtccaagcagaagatcccgacaccatgccagagattacgtatacaatccttcgtggc
gacaccgaccttttctccatagaccgcaaatctggtatgatccggaccctcagagagttg
gatcgcgaaatgaccgcgagacacgagcttatagttggcactgaagagaatttggaagac
ggctcagggtctacaactactgttgaagttttggttgacgatagaaatgacaacgcgcca
atcttcacgtcagtggtccgtccaatcacgatagaggactcttcatccatcggcagctta
gtgcaaacagtgacagcggtggattcagactcaacagctccaaacaacagagtgcggtac
aagctagttggcagaggaaaggcttcgaaatatttcaacgtggaaccggatactggtgct
gtgagggtgcgcgacgatctgaggaaggaaactgatagtgaatacactgtggatgtccaa
gcgtacgatcaaggtgaacccatgatgtcttctgtcaccagtttgactgtttacgtcagc
cattctgcaactgtcccgccagatgtgggccttggttttgcagacacagtgtatacagag
catgtagcagagaactcgcctaacggaactctagtgaggatcttgcctcttctgaacaag
cgagagcattctccgaacactccgctgaaatgtaaactgactgattcatcacagaaaggt
gtattctatgtaagattaactgaggacagagattgtgcaatctatcttaacacaagctct
ctcgactacgaaacactgaacgggtactccctagaaatccagctagagtctatcaagggt
cttattaatccagaaagtagcaaagccaatgtaaaagtccacgtaactgatgtgaacgac
aactctccggtattcgtgtttcccgaacagtctaccattgccgctgcgaaagggaaatac
tttgctatagttacaaaggatacgccattgggcacgaacgtcgtgcaagttaaggcaaaa
gacaaggacagtggagaattcggaaggatagagtaccataagaactcttggactaaagcg
gcagaagaatacttcagcctagaaacggatacgggcgtcatcaccaatattaagacgttc
gagaatgttccacctgatgtactgccctttaaattcagtgtaactgctcgggacaacccg
aattcatcgcaggactacaatatagccaggacttctgtcgtgataaatcttctccaaaaa
gacaaccaacttatactggaagtatcaaacctaaacaatgacgcattacgtcgccgttcg
cgcagcttgctagcagccatagaagagaagagcggactcatagcggggctagagaaagtc
accgacaggcactacttaggagtaaatgggacgctggagagcgatcccaaaggaacagac
gtctggttgtatctgttggacccgagcacggggcagatattgacgagggactcggaaact
gttcaaaaagctatagaaagcggcattaacaaagccgtatcagctcgtctccagtcccaa
gtgagccaggtccgtccgccactgcaagctaaagagcaacctcgcaagccgcaagtggcc
gccgcgccactcgctacagctctgcccgccgcattgttggctctcgccgcgctcgtgctg
gtcgctgccagtgctgccacaatctacatatgcgcgtcgtggagcagatacaagcggcac
aaggagcaagcggtgcaacaatatggtaccctaagcatgagcatggcgccgccacggccc
aactcgggatacgagtccagcgaggacgacccggcgcctcgatacgagactcaggttctg
aatatggctgtagacgacgcggacttgcagttggatttcagtccaaacaaccatgcgttc
aacatacacagcgtgcaatatctctcgaaagacaacggtgaacggagccctacattatcc
gaaacagcgaccacggcgcgagcgtccagcgtcaacgaaaacgggacactaaacaaccat
caccaattcgacaacatagccaacaactcaacctttgcgcgcaatacacagacactaaac
agacgagcgcctaacaaccacgcattgaacaacgcactagggactctaccgagagtcaac
aataataacgtgggcgggggactgcttgccaccacgctgggaagaaagattaacggtggc
aataatcataagaagaaagcgtcgcagcctataatggcatacgatgagataccaggatta
caaagggcatcggataacgacaacgtgactttcggtaaaagaaattttactggatatacg
tacgaccaatcgcccgtagagaccaccaccgagctatag
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integrated database retrieval system
