Choristoneura fumiferana (eastern spruce budworm): 141438160
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Entry
141438160 CDS
T11020
Symbol
DNAlig4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
141438160 (DNAlig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141438160 (DNAlig4)
Enzymes [BR:
cfum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
141438160 (DNAlig4)
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
141438160 (DNAlig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
141438160
NCBI-ProteinID:
XP_073957989
LinkDB
All DBs
Position
18:17568534..17584808
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AA seq
893 aa
AA seq
DB search
MATVEVVPANLVLFGDLCEVLDSIYKKKKDRTEQDKILTRFIDGFRLNAQKVDGNKDCSF
FPILRLLLPECDRERGPYNMKAPKLGALLVKVLALNPSTAAAKKLTEYRSVNTQESDFAG
VAYFEIKNRMSQKTSTFTIQDVNNVLDKIATAHGEKGPILDDAFSHVMRNATAEQMKWFL
RIILKDLKLGMSMNRILAAFHPQGPEYYNNCSNLVEMCKDLKDRSTRPQLLGVRLFRLVR
PMLSARLPVTRAALLPAQPYYIEEKFDGERFQMHMQNGVFQYLSRKGHPYSDNYGESYES
GLLTPFLKDCFSATVDSVILDGEMMGWHKQNQKFSTKGVAFDVKKITVNSHYRPCFCVFD
VLYYNGAVLVGPAEGGGGGGRPLRERAALLDSIVSDVPGVIVKSKRKLVKNSSDILEALN
NSIKNEEEGIVVKATESYYIPNERNAGWYKIKGEYTDSTMSDLDLVIIGAEEAEDKRHGR
AKSFLVACADAAAPGLKPHRWVSVGRVATGLSDEERASVCETLEQHWMPRRSAPPPACLY
FNKEQPDLWVLPEHSIVLQVRATELIRSKDFGTAYTLRFPRVMRIRRDKPVDDVMTLQDF
QALIADKGPVIKLSTTTVDESQVESEVRVRRKRTAQVLKVAEQFRARPAGEVEVVSKALQ
GREICVLSDTEDCKKSELIGIVESHGGKHVENVGPNTWCCVAGRLNFRVNSYITAQEVNI
VSAAWLRSLPPSDTICSLSPIDMISINKKTKLALSRDYDRFGDSYQAFTNEDLLRACFAK
MDELKEPQIFLTTQEMLNLDMKLFGDNNPFSFLRSCFIHFPSKNVQSVQAKMYGASLCEK
TSPTLSHIVLPAEAKDDEIIDAKRLFRGLVVSEKWLNECFERKQYVSEKEFLL
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggctacagtcgaggtcgtcccagccaacttggtgctgttcggggatctctgtgaagtt
ttggactctatatacaaaaagaaaaaagacagaacggagcaagacaagatattaacacga
ttcatagacggatttagattgaatgctcaaaaagttgatggcaataaggactgcagtttt
ttccctattttgaggctactcttgccagaatgcgatcgcgagagaggcccctataatatg
aaagcgcctaaactaggcgctctgttagtaaaggtgttggctttaaatccaagtaccgct
gctgctaagaaactgactgagtacagatcagtgaatacacaggaaagcgacttcgctggc
gtagcttatttcgagataaagaacaggatgtcgcagaaaactagcactttcaccatacag
gatgtgaataatgttttggataaaatcgctacggcacatggtgaaaaagggcccatttta
gatgatgccttcagtcatgtgatgcggaatgcgaccgccgagcagatgaagtggttcctc
aggataatactaaaggaccttaagctgggtatgagcatgaaccgtatactggcggcgttt
catcctcaaggtcctgaatactacaacaactgcagtaatcttgtcgagatgtgtaaggat
ctgaaggaccgcagcacgcgtcctcaactgctgggcgtgcgtctgttccgcctggtgcgg
cccatgctgtccgcgcggctgcccgtcacgcgcgccgcgctgctgcccgcccagccttac
tacatcgaggagaagttcgatggcgagaggttccagatgcacatgcaaaacggagtgttc
cagtacttgtcaaggaaaggtcacccgtattccgataattacggggaaagttatgaatca
ggcttgctgactcctttcctgaaggattgcttctccgccaccgtcgacagtgtgattcta
gatggagaaatgatggggtggcacaagcaaaaccagaagtttagcaccaaaggtgtggca
tttgacgtgaaaaagataactgtcaactcgcactaccggccgtgtttctgcgtgttcgac
gtgctgtactacaacggcgccgtgctagtgggcccggcggaaggagggggagggggcggc
cggccgctgcgcgagcgcgccgcgctgctcgactccatcgtctctgacgtgcccggcgtt
atcgtgaagagcaagcggaagctggtcaaaaatagttccgatatattagaagcactaaac
aactctattaaaaacgaagaggaggggatcgtcgtgaaggctactgaatcctactacatc
ccgaatgaacgaaatgctggctggtacaaaattaagggcgagtacacagatagcaccatg
agcgatctggacctggttataatcggagccgaggaggctgaggacaagcggcacggacgc
gccaagagcttcctcgtcgcctgcgcagacgccgccgcaccgggtctaaagccccaccgc
tgggtgtcagttggccgagtggcgactggtctaagtgacgaagagcgcgcatcggtgtgc
gagactttggagcagcactggatgccgcggcggagcgcgccgcccccggcctgtctctac
ttcaacaaggagcagcccgacctctgggtgcttccagaacattccatagtactacaggtc
cgcgcgaccgagctgatccgcagtaaggacttcggcactgcgtacacgctgcgattcccg
cgcgtcatgcggatccgccgcgacaaacccgtcgatgacgtcatgacgcttcaagacttc
caggcccttatcgctgataaaggtccagttataaaactgagcacaaccacagttgacgaa
agccaagtagagtccgaagtcagagtacgcaggaagcgaacagcccaggtgctcaaggta
gcggaacagttccgcgcgaggccggccggcgaagttgaggtcgtgtccaaagccttgcag
gggcgcgagatatgtgtcctctctgataccgaggattgcaagaaatctgagctgattggc
atcgtggagtcgcatggtggaaaacatgtggagaatgttggtccaaacacctggtgctgt
gtagccggtcgcctcaacttccgagtcaacagctacatcaccgctcaagaagtcaatata
gtctcggccgcctggctgcgctcgttgccaccctccgatacaatctgttctctctcccca
atagacatgatctcaatcaacaagaaaactaagttagctctcagcagagactacgaccgt
ttcggcgacagctaccaagcttttaccaatgaggaccttttgagggcttgttttgcgaaa
atggatgagttgaaggagccgcaaatatttctaacaacacaagagatgttaaacctggat
atgaaactgtttggcgataacaatcctttttcatttcttcggagttgctttatccatttt
ccgagcaaaaacgtacagtccgttcaagcaaagatgtatggagcgagtttatgcgaaaaa
acctcccccactttgtcccatatagtgttacctgcggaggcaaaggacgacgaaattata
gatgcgaagagattattcagaggtttggttgtctcagagaaatggttaaatgaatgcttt
gaaaggaaacaatatgtttccgaaaaggagttcttattgtga
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