Campylobacter fetus subsp. venerealis 97/608: CFV97608_1164
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Entry
CFV97608_1164 CDS
T03351
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfx
Campylobacter fetus subsp. venerealis 97/608
Pathway
cfx03030
DNA replication
cfx03410
Base excision repair
cfx03420
Nucleotide excision repair
cfx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFV97608_1164 (ligA)
03410 Base excision repair
CFV97608_1164 (ligA)
03420 Nucleotide excision repair
CFV97608_1164 (ligA)
03430 Mismatch repair
CFV97608_1164 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfx03032
]
CFV97608_1164 (ligA)
03400 DNA repair and recombination proteins [BR:
cfx03400
]
CFV97608_1164 (ligA)
Enzymes [BR:
cfx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFV97608_1164 (ligA)
DNA replication proteins [BR:
cfx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFV97608_1164 (ligA)
DNA repair and recombination proteins [BR:
cfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFV97608_1164 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFV97608_1164 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFV97608_1164 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFV97608_1164 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
Nlig-Ia
PDZ_1
Motif
Other DBs
NCBI-ProteinID:
AIR80783
LinkDB
All DBs
Position
complement(1155361..1157298)
Genome browser
AA seq
645 aa
AA seq
DB search
MDKNDYLKAVDSLNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSYSPTNRI
GGEILDEFKKISHIEKMWSMEDIFSDSELVAWISRGDKTDCEFFAEPKFDGASLNLLYEN
GNLISAATRGDGSVGEDVTNNAKVISSVPLQIDYKDKIEIRGEVVITKDDFELINIERSK
NSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNKHSQIMDFVRSLGFL
HDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLGYTVKFPKFMVA
YKFPATEKTARLIDILLQVGRTGVVTPVGLLDGVLIDGAFIKNVTLHNFDEIDRLNLMKN
DFVTVIRSGDVIPKITGVFKDRRDGSQSEIIRPKICPECGNELLDEGVFIKCQNLTCKAR
VVSSITYFASKKCMNIDGLGDAIVELLYQKNIIKDIADIYRLDELSFIGLEGFKTKKISN
LLSAINNSKTPNLDKFIASLGIEHIGEVAAKKIANNYGDRWLELTLEELLALDGFGEAMA
LSYLEFMRVNLEKIKELLEFITPKMQNLELKTNIFSGKTVVITGTLSRSRDEFKAELESY
GAKVSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESEYESLK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaatgattatttaaaagcagtcgatagtttaaatttatgggcaaaggcttat
tataccgatgattctccgatggcgtcagatgatgagtatgacaagctttataacgccgta
gttcagtttgaaaaagaaaatccggatttaaaactctcttactctcctacaaatagaatc
ggtggagagattttagatgagtttaagaagatatctcatatagaaaaaatgtggtccatg
gaggatatatttagtgatagcgagcttgttgcttggatttctagaggagataaaacggat
tgcgagttttttgccgaacctaaatttgatggagctagtttaaatttactttatgaaaac
ggaaatcttataagcgctgctacaagaggcgatggaagcgttggagaagacgtcacgaac
aatgcaaaggtcataagctcagtaccgttgcaaatagactataaagataaaatagaaata
agaggcgaagtcgtcataacaaaagatgattttgaattgataaatattgagcgtagcaaa
aattcagaaccgcctttagcaaatccgagaaacgcagcagccggaagccttagacagctt
gataatggtatagtaaaacagagaaaacttaagttttatccatggggagtcggagagaac
tctttgaaatttaataaacattctcagattatggattttgtaagaagtcttggtttttta
catgataatttttgtaaagtgatcagaggtatcgacgagttaaaaattgcttataaagag
cttttaagtgtaagagagcttaagcctattttgatggacggaatggtaatacgagtaaat
gatttatcaaaagctaatcagcttggttataccgttaaatttccaaaatttatggtagct
tataaatttcctgccactgaaaagactgcaagattgatagatatattgctgcaagtagga
agaacaggagtcgtaactccagtgggattgcttgatggagttttgatagatggtgcgttt
ataaaaaatgtcacgcttcataattttgatgagatagatagattaaatttaatgaaaaat
gactttgttaccgtgataagaagcggagatgtcatacctaagattactggagtatttaaa
gatagaagagacggtagtcaaagtgagataattcgcccaaaaatttgccctgaatgcgga
aacgagcttttagacgaaggtgtttttataaagtgtcaaaatctaacttgcaaagctaga
gtcgtgagttctattacctatttcgcatctaaaaaatgtatgaatatagacggtcttggt
gatgctatagtagagcttttatatcaaaaaaatattattaaagatatcgctgatatttat
aggcttgatgagcttagttttataggtcttgagggatttaaaactaaaaaaatttcaaat
ttattatcggctattaataactctaaaactccaaatttagataaatttatagcgtcttta
ggcatcgaacatataggcgaagttgccgctaaaaaaatagcaaataattatggagatagg
tggcttgaattaactcttgaagagcttttagctttagacggatttggtgaagctatggct
cttagttatcttgagtttatgagagtaaatttagaaaaaataaaagaacttttagaattt
atcactccaaaaatgcaaaatttagagttaaaaacaaatatattttcaggaaaaacagta
gttataacaggtactttgtctcgctctagagatgagttcaaagcagaactagaaagttat
ggtgctaaagtatctagctcggtgtctaaaaaaacggatttcgtattatatggaaatgaa
gccggaagtaagctagaaaaagcaaatgaattaggcgtaagagcaatagatgagagtgag
tatgaaagtttaaaatga
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