Corynebacterium freneyi: I6L56_00675
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Entry
I6L56_00675 CDS
T08562
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfy
Corynebacterium freneyi
Pathway
cfy03030
DNA replication
cfy03410
Base excision repair
cfy03420
Nucleotide excision repair
cfy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6L56_00675 (ligA)
03410 Base excision repair
I6L56_00675 (ligA)
03420 Nucleotide excision repair
I6L56_00675 (ligA)
03430 Mismatch repair
I6L56_00675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfy03032
]
I6L56_00675 (ligA)
03400 DNA repair and recombination proteins [BR:
cfy03400
]
I6L56_00675 (ligA)
Enzymes [BR:
cfy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6L56_00675 (ligA)
DNA replication proteins [BR:
cfy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6L56_00675 (ligA)
DNA repair and recombination proteins [BR:
cfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6L56_00675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6L56_00675 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6L56_00675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6L56_00675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QXA53954
LinkDB
All DBs
Position
150484..152592
Genome browser
AA seq
702 aa
AA seq
DB search
MSDAPAPEVRRAWEELAAEIRDHSAKYYTGQPVISDAEYDALFRRLQQMEAEHPELAVPD
SPTQQVGARVDAPADGVAFEPVEHLQRLYSLDNVFDEAELRDWLARTPASAYLTELKIDG
LSIDLIYENGRLVRAATRGDGRVGENVTANARTIADIPHELELSDEYPIPDVLEVRGEVY
IPVGEFDGLNADRAAAGQRTFANPRNAAAGSLRQKDPAETAKRPLAMICHGIGHVEGWRP
ETQHDAYLALAAWGLHVSPYTEKVEDPEDVVKRVLYWGEHRHDAEHEMDGLVVKVDALAE
QRALGATSRAPRWAIAFKYPPEEVTTELLDIRVSIGRTGRATPYAVMRPVTVAGSTVEMA
TLHNPTEVKRKGVLIGDRVTIRKAGDVIPEVLGPVADVRDGTEREFIYPTLCPECGTRLA
PAKEDDADWRCPNTRYCPGQLRRRVEFLASRGGFDIEHLGERGAADLIHRGVLSDEGDLF
ALTAADLERTEVYTTAAKKKVGDDGVARGTLNANGRKLLDFIEAAKSRELWRVLVSLSIR
HVGPTAARALAQRFGSMDAIRAASREELADTDGVGGIIADSVIAWFAVDWHREVVEKWEA
AGVRMVDEVSDRPEQVLEGLTVVVTGSLEDFTRDSAKEAILVRGGKAAGSVSKKTSVVVV
GDNAGSKATKAEELGVPILDEAGFHRLLADGAAAIRSADSAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
ctgtccgacgcccccgcccccgaggtgcggcgggcgtgggaggagttggcggcagagatc
cgcgaccattcggcgaagtactacaccggccagccggtcatctccgacgccgaatacgac
gcgctgtttcgccggctgcagcagatggaggcggagcatccggagctcgccgtgccggac
agccccacccagcaggtcggcgcccgcgtcgacgcacccgccgacggggtggccttcgag
ccggtcgagcacctccagcgcctgtacagcctggacaacgtcttcgacgaggcggagctg
cgggattggctggcccgcactccggcatcggcctatctgacggaactcaagatcgacggc
ctgtccatcgacctgatctacgaaaacggccgcctggtccgggcggcgacgcggggcgac
ggccgcgtcggcgagaacgtcaccgccaacgcccgcaccatcgccgacatcccgcatgaa
ctcgagctttccgacgagtacccgattcccgacgtgctcgaggtccgcggtgaggtctac
atccccgtcggcgagttcgacgggctcaacgccgaccgtgcggcggcgggtcagcgcacc
ttcgccaatccccgcaacgccgcggccggttcgctgcggcagaaggacccggcggagacg
gccaagcgtccgctggcgatgatctgccacggcatcggccacgtcgaggggtggcggccc
gagacccagcacgacgcgtacctggcgctggcggcctggggcctccacgtgtcgccgtac
acggagaaggtggaggacccggaagacgtcgtcaagcgcgtcctgtactggggcgaacac
cgacacgacgccgagcatgagatggacggcctggtggtgaaggtcgatgcgctggccgaa
cagcgcgcgctgggtgcgacgtcgcgggcgccgcggtgggcgatcgcgttcaagtacccg
ccggaggaggtcaccaccgagctgctggacatccgcgtgtccatcggccgcacgggccgc
gccaccccgtacgccgtgatgcgcccggtgacggtggccggttcgaccgtcgagatggcc
accctgcacaatcccaccgaggtcaagcgcaagggcgtgctcatcggcgaccgggtgacc
atccgcaaggccggcgacgtcatcccggaggtgctcggaccggtcgccgacgtgcgcgac
ggcaccgagcgggaattcatctacccgacgctgtgccccgaatgcggcacccgcctggcg
ccggcgaaggaggacgacgccgactggcgctgcccgaacacccggtactgcccggggcag
ctgcggcggcgcgtcgagttcctggcgtcacgtggcggcttcgacatcgagcacctgggc
gagcgcggcgcggccgacctcattcaccgcggcgtgctttccgacgaaggcgacctgttc
gccctcaccgccgccgacctcgagcgcacggaggtgtacaccaccgcggcgaagaagaag
gtcggcgacgacggcgtcgcgcgcggcaccctcaacgccaacggccggaagctgctcgac
ttcatcgaggccgcgaagtcccgcgagctgtggcgggtgctggtgagcctgtccatccgt
cacgtcggcccgaccgccgcccgcgccctggcgcagcggttcgggtcgatggacgccatc
cgcgccgcgtcgcgcgaggagttggcggacaccgacggcgtcggcgggatcatcgccgat
tcggtcatcgcgtggttcgcggtcgactggcaccgcgaggtcgtggagaagtgggaggcc
gccggcgtgcggatggtcgacgaggtgtccgatcgtcccgagcaggtcctcgaggggctg
accgtcgtggtgacggggtcgctggaggatttcacccgtgacagcgccaaggaggccatc
ctcgtccgcggcggcaaggcggcggggtcggtgtcgaagaagacttcggtggtcgtcgtc
ggcgacaacgcgggttcgaaggccacgaaggccgaggagctgggcgtgccgatcctcgac
gaggcgggtttccaccgcttgcttgccgacggcgcggcggcgatccgctcggccgactcc
gccgagtga
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integrated database retrieval system
