Clarias gariepinus (North African catfish): 128508600
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Entry
128508600 CDS
T10780
Symbol
slit1a
Name
(RefSeq) slit homolog 1a isoform X1
KO
K06838
slit 1
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgar00536
]
128508600 (slit1a)
Glycosaminoglycan binding proteins [BR:
cgar00536
]
Heparan sulfate / Heparin
Axon guidance molecules
128508600 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
LRRNT
hEGF
Laminin_G_1
EGF_TEN
LRR_1
LRRCT
LRR_9
LRR_14
EGF_Teneurin
JAG1-like_EGF2
EGF_DL_JAG
EGF_3
LRR_EndoS
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
128508600
NCBI-ProteinID:
XP_053335971
LinkDB
All DBs
Position
20:16630734..16718194
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AA seq
1536 aa
AA seq
DB search
MPMRGCRTWKWALLLCGALFAHRATACPALCTCSGTTVDCHNLGLKSIPRNIPRNTERLE
LNGNNFTRINKNDFSGLKYLRVLQLMENQIGAIERGAFDDMKELERLRLNRNQLYQLPEL
LFQKNAALSRLDLSENFIQAIPRKAFRGATDIKNLQLDKNHIGCIEDGAFRALRGLEVLT
LNNNNISAIPVSSFNHMPKLRTFRLHSNNLNCDCHLSWLSQWLRQRPTLGLFTQCSSPPQ
LRGINVAEIQKHEFSCSGHSENSSPQTCSLASGSCPTMCTCSNNIVDCRGKGLTAIPANL
PENMAEIRLEQNSIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRSLNSLVLYGN
KITELPKGVFDGLYALQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNKIQTLAKGTFAS
LRAIQTLHLAQNPFICDCNLKWLADYLRANPIETSGARCASPRRLANKRIGQIKSKKFRC
SAKEQYSIPGTEDTRLNNECNNEPVCPAKCRCESNVVDCSNLRLTKIPEHIPASTTELRL
NNNEITSLEANGAFKSLAQLKKINLSNNKITEIEDGAFDGASSVSELHLTANQLDSVRSG
MFRGLEGLRMLMLRNNRISCIHNNSFTGLYNVRLLSLYDNQLTTISPGAFDTLQTLSTLN
LLANSFNCDCRLAWMGDWLRTRKIVTGNPRCQRPAFLKEIPLQDVALPDFRCEEGQEDVS
CLPRPQCPSECTCLETVVRCSNKHLHALPKGIPRNVTELYLDGNQFSAVPKELSTFKYLQ
LVDLSNNKINTLTNSSFANMSQLTTLILSYNALRCIPTLAFAGLRSLRLLSLHGNDISEF
PDGIFSDAVSLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCSGPPEMEGKLLLTM
PAKKFECHGEIETSVLSKCNPCLSNPCMNHGTCQIDSTELYKCTCVEGFKGKNCETALNA
CISNPCSNGGTCQVTEEEDSYICSCPLGFDGQRCEINIDDCEDNDCENGATCKDGVNNYT
CLCSPYYTGDMCEELEDVCAPERNPCKHQSTCLITAAGPKCVCTPGYVGDDCSVDYDDCQ
EHKCQNNAECVDEINGYSCACPRGYSGQLCEVPPAPRSPCELADCQNDAPCMERAGRALC
QCLPGFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAEDNGILLYNGDNDH
IAVELFQGHVKVSYDPGSQPSHAIYSTETINDGQFHTVELVTFDQMVNLSIDGGVPTTMG
SVGTVRPLNGDAPLYVGGRGPAQIPRSTAGMPVDVHSSIAPRAWHIQNGSSFHGCIQNLY
INNELQDFTKTQMKPGVVPGCEPCQKIYCLHGICEPDAALGPVCHCQPGWSGQNCDQSSS
NPCQGNKCVHGKCIPLDMQSYRCECQEGYRGALCNQQGELFNPCRRLQCKHGRCQISDTG
DAYCHCDSGYTGELCDQESECRGEAVRDFYQVQRGYAICQTTRMLSWVECSGACQPGACC
ASQRTKRRKYTFECSDGTSFSEEVEKSIKCGCVGCM
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgagaggctgtaggacatggaagtgggcactgctcctgtgtggcgcactgttt
gcccaccgtgccaccgcgtgcccagctctgtgcacctgcagcggcaccaccgtggactgc
cacaacctggggctcaagagtattcccaggaacatcccaaggaacacggagcgactagag
ctgaatggaaataacttcactcgcatcaataagaatgattttagtggactcaaatacctt
cgtgtcctgcagctgatggaaaaccagattggagccatcgagcggggggcctttgatgat
atgaaagaactggagagactacgtctaaataggaatcaactgtaccagctgccagagcta
ctgttccagaagaatgccgctttgtcacgactagacctaagtgagaacttcatccaggcc
attccccgcaaggccttccgtggagctacggacatcaagaaccttcagttggacaaaaat
cacattggttgtattgaggatggagcattcagggctcttcgagggttggaggttttaaca
ctaaacaacaacaacatcagtgccataccggtatcgagttttaaccacatgcccaagctg
aggacgttccgtctgcactcaaataacctgaattgcgactgccacctatcctggttgtcc
cagtggctgcgtcagagacctacactcggcctgttcactcaatgctcgtctccaccacag
ctccgcgggattaacgtggccgagatccagaaacacgaattcagttgttcaggtcattca
gagaattccagtccacagacatgcagtcttgcctctggctcctgtcccaccatgtgcacc
tgcagcaataatatagtggactgcaggggtaaaggactaacggccatcccagccaacctg
cctgaaaacatggcagaaatacgactggaacaaaacagcatcaagtctgtcccaccagga
gcgttttcaccgtacaagaaactgcgccgaatagacctcagcaacaaccagatctctgag
attgctcctgatgcgttccaaggcctgcgttctctcaactctctggtactgtatgggaat
aagatcactgagttacccaaaggagtgtttgacggcctctatgctctccagctgctacta
ttgaatgccaataagatacactgcgtccgtgctaatgcattccaagacttgcagaacctt
tccctgctgtctctctatgacaacaagatccagactctggccaagggcacctttgcctcg
ctgcgtgccattcagacacttcacctggcccaaaacccatttatctgtgactgtaacctc
aaatggctagctgactatctccgtgccaacccgatcgagacaagcggcgcacgatgtgct
agcccacgccgccttgctaacaagcgtatcggccagatcaagagcaagaagttccgctgt
tctgccaaagagcagtactccattccaggcactgaggacaccaggttgaacaacgaatgc
aacaatgaacctgtttgcccagccaagtgccgctgtgaatctaacgtggtggattgctcc
aatctgcgcctcaccaagatccctgaacacatcccagcctccaccactgagcttcgcctg
aacaacaacgaaatcacttccctggaagcgaacggcgcgtttaagtctctggcgcagctg
aagaagataaatctcagcaacaataagattactgaaattgaggatggcgcgtttgacggt
gcttcgtcggtctcggagcttcacctgacagccaatcagttggactcggtgcgcagtggc
atgttcaggggcctggaggggctacggatgctgatgctgcggaacaaccgcattagctgc
atccataacaacagcttcactggcttgtacaacgtacgtctactatcgctgtacgacaac
cagctgaccaccatctcacctggtgcttttgacacacttcagaccctctcaaccctgaac
ttgctggccaatagctttaactgcgactgccggctagcatggatgggcgactggcttagg
actcgcaagattgtcaccggcaacccgcgctgtcagcggcctgccttcctgaaggagatt
ccgctgcaggatgtggctctgccagatttccgctgtgaagaaggccaagaggatgtcagc
tgcttgccacgtccacagtgcccgagcgagtgtacttgcctggagacagtggtccgctgt
agcaacaagcaccttcatgccctccctaagggcatcccacgtaatgttactgagctgtac
ctggacggcaaccagtttagcgccgtgccaaaagagctctccaccttcaagtatctgcaa
ctggttgatctgagcaacaacaaaatcaacactttgacaaactcctcctttgcaaacatg
agtcagctcaccaccttgatcctgagttacaatgcacttcgctgcattccgacacttgct
ttcgcaggtcttcgttctctccgtctgctgtccctgcacgggaatgacatctctgagttt
cctgatgggatcttcagtgacgctgtttctctgtctcacttagccattggtgcgaaccca
ctgtactgtgactgccgcttgcgctggctttcagactgggtgaagacgggttataaggag
ccgggcattgctcgctgttctgggccacctgaaatggagggaaagcttctcctcaccatg
ccagccaaaaagtttgagtgccatggtgaaattgaaacatctgtcttgtctaagtgtaac
ccgtgcctatccaatccctgcatgaaccatggcacatgccagatcgattcaacagaactg
tataagtgtacatgtgtagaaggctttaagggaaagaactgtgagactgccctaaacgcc
tgcatcagtaacccgtgctctaatggtggaacgtgccaagtgaccgaagaggaagatagt
tatatttgttcatgtcctttgggattcgacgggcaaagatgtgaaatcaacattgacgac
tgtgaggacaacgactgtgagaatggagcgacgtgtaaagatggtgtgaacaactacaca
tgcttatgttcaccttattatacaggagacatgtgcgaagagctagaagatgtgtgtgct
cctgaacgcaacccctgcaagcaccaatcaacctgtctaatcacagcagctggcccgaag
tgtgtgtgtactcctgggtatgtgggagatgactgcagtgtagactatgatgactgtcag
gaacacaagtgccagaacaatgcagagtgtgtggatgagatcaacggttactcctgcgct
tgcccccgaggctacagtgggcagctgtgcgaggtgccgccggcaccacgttccccctgt
gagttggctgattgccaaaacgacgcaccctgtatggagcgggcgggccgagctctgtgc
cagtgtctgcccggctttggcgggccacgctgtgagaagctggtcagtgttaattttgtt
gaccgggactcatatttgctgctgagcgacttgaagaactggcctcaggccaacatcacc
ttgcaggtgtccactgcagaagacaatggcatcctactgtataatggagacaatgaccat
atcgcagtggaactcttccaaggtcatgtcaaggtcagctatgaccctggtagccaacca
agccatgctatttacagcacagagaccattaacgatggtcagttccacacggtggaattg
gtgacctttgaccagatggtgaacctatcgatcgacggcggcgtgcccaccaccatgggc
agcgtcggaacagtgaggcccctcaatggagacgctccgctatatgtggggggtaggggt
ccagcgcagatacctcgctccactgcaggcatgcccgttgatgtccactcgtccattgcg
ccacgggcctggcacattcagaatggttctagttttcatggatgcatccagaacctctac
atcaacaacgagctgcaagacttcaccaagacccagatgaagcctggcgtggtgcccggt
tgtgagccatgtcaaaagatttactgtcttcatggaatctgtgaaccagatgccgctctt
gggcctgtttgccattgtcaaccagggtggagcggccaaaactgcgatcagtccagttcc
aacccatgccagggcaacaagtgtgtgcacggaaaatgcatcccgctggacatgcagtcc
taccgctgtgaatgccaagaaggttaccgcggtgctctgtgtaaccagcagggagaactc
ttcaacccgtgcagaaggttacagtgcaagcatggccggtgtcagatttccgacacgggt
gatgcgtactgccactgtgacagcggatacactggagagttgtgtgatcaagagtctgag
tgccgtggtgaggcagtgcgggacttctaccaggtccagcgcggctatgcaatctgccag
acgacgcgcatgctctcgtgggtggaatgcagtggagcgtgccagccaggagcctgctgt
gccagccagaggaccaagcgccgcaaatacacgtttgagtgcagcgatggcacctcgttc
agcgaagaggtggagaagagcatcaagtgcggctgtgtgggctgcatgtag
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