Clarias gariepinus (North African catfish): 128511081
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Entry
128511081 CDS
T10780
Symbol
si:ch1073-335m2.2
Name
(RefSeq) msx2-interacting protein isoform X1
KO
K25100
Msx2-interacting protein
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
128511081 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128511081 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
128511081 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MINT_MID
SPOC
RRM_5
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
128511081
NCBI-ProteinID:
XP_053339687
LinkDB
All DBs
Position
23:complement(25748770..25766838)
Genome browser
AA seq
3232 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEYFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSSVRGLEDNPPSSSHTRDVATFSRAAVGPVYGPPV
SLHTREGRYERRLDGTTDTRDRAYEHNPYGHHERSGTFDRPRHYNTDYYRDRAIFASGVG
ASPAVSAISGGFDTTESHFESRIRDPFTLSGSARRDPYRDDRGRRVDRTYHHRRSRSSHS
SQSRHPSPQRTTGQTPKAPHSPKRAPVSPSRGPRSRSRSRSSSSDSVSSTSSTGSGSSDS
NSSSSEGSRARSVQSAATHPPPAPPPLSLDCDEPRRSFGIRVQNLPVRSTDTSLKDGLFH
EFKKYGKVTSVQIHGASEERYGLVFFRQQEDQEKALSVSKGKLFFGMLIEVTAWNGPETE
SENEFRPLDGRIDEFHPKATRTLFIGNLEKTTNYQQLLDVFQRFGEIVDIDIKRVNGVPQ
YAFVQYSDIASVCKAIKKMDGEYLGANRLKLGFGKSMPTTCVWLDGLSSNITEQYLTRHF
CRYGHVVKVVFDRLKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQVAFYR
SMQASGQDMRDFYEIPAERRDDRRPSYHEFSAERAYYENVRAPGIYAEDPRRDYPARSRE
RYPELDHYQGDHYDPRYHEDPRDYRDYRDPFEQDIRKYSYIQRERERERERFEADRSRWS
PSHPRRPITPSASPSPSERVSREAERRVYRHSSERSGSCSSLSPTPQFEKSEKSPVDFKT
DSLDREVEQAEADRVSGTEKSKRGRRKEKADREKGEKTKSRRGKVQSPSVPYSEADREPS
QDSNSGKAKGSDVEGSERQRHKGEGEPSPSDPMSRLESQKEKLDGAKIDSVDRDNKGRSK
KHLKSEVGNEGKDPLLDSDRLAARKRRFGDPSKTNKQKRGRLEDEQSTVSQPADVGASYS
KEGESDVKTLDKDTQKREHSKSKSERVVTHCRDELDHRADSQNSSGRQEEHSETNVESLD
LKSQSGLSVSRQFSNDGTPEKDNKGREELLDIDLSQSYRKQMEQNRRLRQQLQEPDKPGK
PETPQCVEPEDFEHRSLVHEVGKPPQDVTDNSPPTKSKKQDHLDIEVGTKRERVYRIFRP
KSEESEWTINSPKFNPSQLGEEEYTDVPQLITVKEVKEPPKHEDSSHQDIDPVKRVHTTQ
VSKLSTSQHDEQRRWESRLKQDLLPDFSRSSEKRRLNRSYLDYRLWPDLEPGEVRSDSEE
DREHKPNSLMPSTSVSFPERHRGDRLPESKLTTSLERNKFCSFALDQTITPDTKALLERA
KSLSSSREDNWSFLDSDSHFASFRSRKDTEKVESTPRPTPSWYMKKKKIRSESEDKLDDR
KEDPKPEEQERRELFASRFLHSSIFEQDSRRLQHLERKHEDPEHGMGFPANQQGQNESQP
DTEPVVLFHERFLELTRLQQQKGKEQSQQETKKEEGTDGQVIDKTQEEEQRSVVEQAELK
PAEIKPVSPVQTPQASPMQIIQPLPVQEILKSAPVVTLKETSPQHEVCNVEESAPKQLCL
SVKEEKQPEQPLVSLTNALPQEPPESSRSEFQDSKTLVKEIKTSPNKEFELTNDGDVEQC
SSSEKRTTDSQIICEPKSEPQTEIPEVQNPPSPMIVDEGEGRLEKSEPVPMEVELPAKET
DSKCVDNYTVEEPISPPPRSRNKKGKASPTAPLTPSHTPDKQSTRKSERIDREKLKRSSS
PRVDSSKAVLDSKLTGKSPIHSPETDQNVEQNTPPVRARRRNVRSVYATPVEDESTPQTG
KDVESPRGSRKRGVDKEAGQPQAEPDNPPVPTPPRRGRPPKNRRQGEDFSACKSERSKVA
ETKEFDINESGNSETVTKAGKGKHSPYVNKTANQGTGAVLAKKGDKFDKTSDTVPTTEMD
VESQDSNGQQDSGPLAANEPKEEHKPLSNLETKDKITQIEGTIGSQDKLGETAQEQSPLD
KSTKTKTTRITCTSKLMTEDKSLVLKNLRIRLDVTEVKAMLQTGEDESGHDDGPKKVVSG
TSPKEQVPDHRFEKETIEEDGNKESVTTPPKVKDPHEALSRQMELEEAVENIAKLTEGPP
LLQFKNSTESQAPLSEIVEGREEDKPANPASETELAAAIDSITSEDLSCGLPQDQVISAV
VDPDPDVQTLVPDAKVEGSNATVQEDSSNTGTPRKSSKGRPKVQKRAKGQKAAASKKEAV
KEVVMEPENLSVKSPESTSTAVAEISPTGAAAVIAPLSKQDSNLAGNIVPEVPKVIESAL
KEQPDLPKLSSPAASKSPSSLRPQLNPYECTSPSLSPTSICLKPSHPSRLSVSPTDRLSQ
PKETAVVSPSASPATPTGSPTLLSDSFAHDSNTSDLRKILAKPRGIPISEVSATSASMHL
RESDVKSALHENRQPSIPAQPVVRQQTSLPSPETKQVFNEKSVISVIASTATSVISRVCN
PSESEEKHSLPMANPFVEKQAPKQMYQTSLEESSTYHGPPVGEEGGNTGRYIVETTSLST
GPTTGLRVNTSEGVVVLSHSGQKIEGRQRISAKISQIPPPSAVDIESPQLVTMPQIKQDL
YSSSQRDVAKSSVPAADHVHSLKTQTNVSTKHESCSDKLDSYPPVQSGVVKRLQQTPGSA
QVMGFHPSEYTMLMKHQKKGEGSEPLNVENVKPAWVSTISPAISPLLPSTGGNHVGFIPG
TSTDRAASHIQTKQEPRSPRKSGHPHSPFAKVSSPIGSSSPKGVSMVLPTGLPTMTQYVP
SVHHSEQSVIMPPHSQHGSLGRMSPHRVGQAISMGHLSQGDVRVNTPPLSVMNYGIHPDG
LASSWAPGQQRPTSPQAVGNREMVLKVNPASARGHEASEEEAARRFHQALTRPTATQLKP
DSIPAEYRSALHSALPLERFNMQPRDMRMLIYHPQGERPAAELHQGHIAEAVPPTSTPTN
ITASLSPRAHLLQKGMSDKDALKQSEIKRATPPPGKDGMLGIRGTVPAMASPKRVQLITS
GPPFSEYSNMYSNLRNVHSQFPENSPMGISQPPRNITPSQGAQESDHNQAQTENQVEHVG
HQQINMVQLLTRYPIVWQGLLALKNETAAVQLHFVCGNKSLGLRSLPVPETGPPLRIVQR
MRLETQQLEGVARRMTGESEFCLLLAMPCGLNQEDVVTQTQVLKSAFINYLKAKLAAGII
NVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLINQISSISPHLMIVITSV
NT seq
9699 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctctgggtgggaaatttacccgaacatgttcgagaagaa
aaaattgtcgaatattttaaacggtatggacgcgtggagagcgtcaaagtcctccgtaag
cgaggttcggaaggcggcgtggcagctttcgtggatttcgttgacatcaaaagcgcccag
aaggcgcacaacgctgtcaacaaaatgggcgacagagaccttcgcactgattacaacgag
cccggctcggtgcccagctcggtccggggtctggaggacaaccctccgtctagcagtcac
accagggacgttgcaactttctcgagagctgctgtgggtcccgtttatgggcccccggtg
tctctccacaccagggagggacgctatgaacgcagactagacggcaccacagacactcgg
gatcgagcatatgagcacaatccgtacggacaccacgaacgcagtggcacttttgatagg
ccgcggcactacaacacggactattaccgagaccgtgccatttttgcctctggagttggg
gccagccctgcagttagtgctattagtgggggctttgacacgacagaatctcattttgag
tctcgaatccgtgatcccttcactttgtctggttccgctcgtcgggatccttaccgcgac
gataggggacgacgcgtcgatcggacttaccatcatcgccggagtcgatcttctcattcc
tcgcaatcacgacacccttctccacaaaggaccacgggacagacccccaaagccccccat
tccccaaaaagagctcctgtttctccaagcaggggtccacgatcacgttcccgaagccga
tcgtccagctcggattcagtcagcagcaccagcagtacaggaagcggcagcagtgattcc
aacagcagttctagcgagggatcacgagcacgctctgttcagtccgcggccactcatcca
cctccagctcctcctccactatctctggactgtgatgaaccacgtcgaagttttggcatc
cgagtccagaacctccctgtacgatccacagacacaagtctaaaagatggacttttccat
gagtttaagaagtatgggaaggtcacctcagtgcagatccatggagcttcagaggagcga
tacggtttggtgtttttcagacagcaggaagaccaagagaaagcactcagtgtgtccaaa
ggaaagctcttctttggtatgctgattgaagtgacagcatggaatggccctgagacggaa
agcgagaatgagttccggccattggatgggcgcatcgacgagtttcacccaaaggcaacc
agaacattgtttattggaaatttggagaaaacaactaattaccagcagctccttgatgtg
tttcagcgctttggagaaatagtggatatcgatattaaaagggttaacggcgtcccccag
tatgcctttgtgcagtactctgacattgccagtgtctgtaaagctattaagaaaatggat
ggagaatacttaggtgccaatcgactcaagcttggctttgggaagagtatgcctacgacc
tgcgtgtggttagacggtctgtcctctaacatcacagagcagtaccttacgcgtcatttc
tgtcgctatggacacgtggtgaaggttgtttttgacagattgaaaggaatggctcttatt
ctatacaacaatacagattttgcacaagcagctgtaagagagaccaaaggatggaagatt
ggtggcaacaaaatcaaggttgatttcgccagtcaggagagccaggtggcattctaccgc
tctatgcaggcatcagggcaagatatgcgtgacttctatgaaatcccagctgaacgaagg
gacgacagaagaccctcatatcatgaattctcagccgagagggcatattatgaaaatgtt
cgtgcgccaggaatctatgctgaggacccacggcgagactatcccgctcgcagccgtgaa
cgttatccagaattagaccattatcaaggtgaccactatgacccacgctatcatgaagac
cctcgtgattacagagattacagagacccctttgaacaggatatcagaaaatatagctac
attcagcgtgaacgtgagcgagaacgcgagcgttttgaggctgaccgcagcagatggagc
ccgtcccatccacgccggcccataacaccttctgcctctccttcaccatctgagcgcgtc
tcaagggaagcagagcgacgtgtgtacaggcactcatctgagagaagtgggagctgtagc
tccttatcgccaactcctcagtttgaaaagtctgaaaagtctccagttgattttaaaact
gatagtctggacagagaagtggagcaggccgaggctgaccgtgtgagtggaacagaaaag
agcaagcgcggcagacgcaaagaaaaagcagacagagagaagggtgagaaaacaaaatcg
agaagggggaaagtgcagtccccgagtgtaccttattctgaagcagatcgagagcccagt
caggactcaaattctgggaaagcgaagggttcagatgtggagggctcagagaggcagagg
cacaaaggtgaaggcgaaccatccccttcagatccgatgtctcgtctggagtcacaaaaa
gaaaagcttgatggtgctaaaattgattcagtggatcgagataataaagggaggtcaaag
aaacaccttaaatcagaagttggaaacgaagggaaagacccgcttttggattcggatagg
cttgcggcacgaaaaaggcgctttggtgatcccagcaaaaccaacaaacagaagaggggt
cgccttgaggatgaacagagcacagttagccaacctgcagatgttggagcttcctattca
aaggaaggagaaagcgatgtgaaaacattagataaagatacacagaaaagagaacattct
aagtccaaatcagagagggtggtgactcattgtagggacgaattggatcaccgagctgat
tcccaaaactcatctggacgacaggaagagcattctgagactaacgtggagtctttagat
ttaaaatctcagtctggactaagcgtgtcaaggcagttctccaacgatggaaccccagag
aaggacaacaaaggcagggaagagttactggacatagatctttctcagagttatcgaaag
caaatggagcagaaccgaagacttcgacagcagctccaagagcctgacaaaccaggaaag
ccagaaactcctcagtgtgtagaaccagaagattttgaacaccgcagcttggtgcatgag
gtaggcaagccaccacaggatgtcactgataactctccaccgactaaaagcaagaaacaa
gatcacttggacatcgaggttggcaccaagagagaacgagtatacagaattttccggccg
aagagtgaagagtcagagtggaccataaactcgcccaaatttaatccctctcaacttgga
gaggaagaatatacagatgttcctcaactgattactgtgaaagaagtaaaagaaccacct
aaacatgaggacagttctcatcaggatatagacccggttaaacgtgtacatactacacag
gtttccaagctaagcacgtcccaacatgatgagcagagacgttgggaaagtcggctaaag
caagacttgctgcctgacttttcaaggagctcagaaaaaaggcgccttaatcgatcgtat
ttggattacagactctggcctgatttagagcccggtgaagtgcgctctgactctgaagaa
gatagagaacacaaaccaaattctcttatgccctcaacctcagtgtccttccctgaacgt
catcgtggagacaggttaccagaatcaaaactaaccacctcactggaaagaaacaagttt
tgttcatttgcactcgatcagacaattacaccagacactaaagcattgctggagcgagca
aagtccttatcctcttcaagggaagacaattggtcttttctggacagcgattctcatttt
gccagttttagaagcagaaaagatacagaaaaggttgagtcaactccacgaccaactcct
tcatggtacatgaagaagaagaaaatacgaagcgagtccgaggataaactagatgatcga
aaggaagatccgaaaccagaagagcaagagcgtcgagagcttttcgcctcacgctttctt
cacagctctatctttgaacaggactcgaggcgtcttcagcatcttgaaagaaagcacgaa
gaccctgagcatggcatgggctttccagctaaccagcaaggccagaatgaaagtcagcct
gatactgaaccagtagtcctcttccatgaacgctttttagagttgacaagacttcagcaa
cagaaggggaaagagcagtctcagcaagaaaccaaaaaagaggaaggcactgatggacaa
gtcattgataaaacacaggaggaagagcaacgcagtgtggttgaacaagctgaactgaaa
ccagctgagattaaaccagtcagccctgtacaaacccctcaggcaagccccatgcaaatc
attcaacctcttcctgttcaagaaattctgaagtcagcacctgttgtgacacttaaggag
acgtcgcctcagcacgaagtttgtaatgttgaagaatctgcccctaaacaactctgtctg
tctgtaaaagaagaaaaacaacctgaacagcctttagtctccctgacaaatgcactgcct
caagaaccccctgaatcaagtagatctgaattccaggactcaaagactttagtgaaggaa
attaaaacaagtcctaataaagagtttgagctcaccaatgacggagacgttgagcagtgc
tccagtagcgagaaacgtactactgactcgcaaataatatgtgaaccaaaatctgagcct
caaaccgagattcctgaagtacaaaaccctccatctcctatgattgtagatgaaggtgaa
ggaagattagagaaatcggagcctgttcctatggaagttgaacttcctgcgaaagaaact
gattcaaaatgtgtggacaattatacggtggaggaaccaatatctcctcctccaaggtcc
agaaacaagaagggaaaggcctcgccaacagcccctttgaccccatcacacacaccagat
aaacagagtactcgcaaaagtgaacgtatcgatagagaaaaactaaaacgctcctcttct
ccaagagtggactcctctaaagcagttttagattcgaagttgactggaaaatcacccatt
catagccctgagactgatcaaaatgtagaacaaaacactccccctgtgagagcaaggcgt
agaaatgtacgttctgtttatgccaccccggttgaagatgaatctacaccacaaactgga
aaggatgtggagtcacctcgtgggtcacgcaagcgtggtgtagacaaagaagcagggcaa
cctcaagcagaaccagacaatccccctgtaccgacaccgccacggcggggacgtccacct
aaaaatcgacgtcaaggagaggatttttcggcttgcaagagtgagcgctcaaaagtagct
gagactaaggagtttgacattaatgaaagtggaaacagtgaaactgtaaccaaggcaggc
aaaggcaaacattccccttacgtaaacaaaactgcaaatcaaggtactggggctgtatta
gcaaaaaaaggagacaaatttgataaaacgtctgacacagtacctactactgagatggac
gtggagtctcaggacagcaatggccagcaggatagtggtcctttagcagcgaatgaacca
aaggaggagcataaaccactaagcaatttagagacaaaagacaaaattactcaaatagaa
ggcactattggaagccaagataaactcggtgagactgctcaagagcagtcacctttggac
aaaagcacgaaaactaaaactactcggataacttgtacttcaaagctaatgactgaggat
aaatctcttgttctcaaaaacctcagaatcaggcttgatgtgacggaggtaaaagcaatg
ctacaaactggggaggacgaatcggggcatgatgacggacctaaaaaggtcgtgtcagga
acatcgcctaaagagcaagtgccagatcatagatttgagaaagagaccatagaggaagat
ggtaataaagagtcagtaacaacacctccaaaggtcaaggatccacatgaggcattatcc
cgccagatggagctcgaagaagctgtggaaaacattgctaaacttacagaaggcccgcct
cttcttcagttcaagaactcaaccgagtcccaagcccctttatctgaaattgtagagggg
cgtgaagaagacaagcctgctaatcctgctagtgaaacagaacttgccgctgctattgat
tccatcacgtctgaagacctgtcttgcggtttgccacaagaccaagttatcagcgctgtt
gtagacccagacccagatgttcaaactttagtcccagatgccaaagttgaaggcagcaat
gcgactgttcaagaagactcatcaaacacggggacaccgagaaaaagtagtaaaggaaga
ccaaaagtccagaagagagccaaaggccaaaaagctgctgcaagcaaaaaagaagctgtt
aaagaggtggtaatggagcctgaaaatctttctgttaagtccccagagtcaacatccaca
gcagttgccgagatttcacccacaggtgctgctgctgtaattgccccattatccaagcaa
gattccaatttagctggtaatattgtccctgaagttcctaaagtgattgagagtgctctt
aaagagcagcctgacttgccaaaattatctagtccagcagcaagcaaaagcccatcatca
ctcagacctcagcttaatccttatgagtgtacgtctccttccctttctcccacaagtatt
tgccttaaaccttcacatccaagtagactttccgtttcccccacagacagattgagtcag
cctaaagagacagcggtagtctccccttcagcctctcccgcaactccaacagggagccca
acattgttgtctgattcctttgcccatgatagtaacaccagtgatcttcggaaaattctt
gcaaaaccaagaggtatcccaatctcggaggtgagtgctacttctgcaagcatgcatttg
agggaaagcgatgtcaaaagtgctctgcatgaaaacaggcaaccttctattccagctcag
ccagtagttcgccagcagacatccttaccatccccggagacgaagcaagtctttaatgag
aaatctgttatttctgtcattgcctccactgccacatctgtcattagtcgagtttgcaac
ccctctgaatccgaggagaaacacagtcttccaatggcaaacccatttgtggaaaagcag
gcaccaaaacagatgtaccagaccagcttggaggaaagtagcacttaccatggaccacct
gttggagaggagggtgggaatacgggtcgctatatagtggagaccacatcacttagtaca
ggccccactactggtctcagggttaacacttctgagggggtggtagtgttgagtcactcg
ggacagaaaattgagggacgacaacgaattagtgcaaaaatcagtcaaattccaccaccc
agtgcagtggacatagaatctccgcagctagtgacgatgcctcagatcaaacaggacctt
tacagttcatcccaaagagatgtggctaaaagttcagtacctgcagcagaccatgttcat
tccctgaaaacgcagacaaatgtatccactaagcatgaatcttgttcagataaattagac
tcgtaccctccagtgcaaagcggggttgtgaagagattacagcagacacctggctcagca
caggtaatgggtttccatccctcagaatacacaatgttgatgaagcatcaaaagaaagga
gaaggaagtgaaccacttaatgtggaaaatgtgaagcctgcctgggtgtctacaataagt
cctgccataagtcctcttcttccttctacaggtggcaatcacgttgggttcataccagga
acgtctacggacagagccgcctcacatattcaaaccaaacaggaaccccgctcaccacgg
aaatccggtcacccccattctccttttgccaaagtgtcttctccgattggctcttcatct
cctaaaggtgtgtctatggtattaccaaccggtttacccaccatgacccagtatgtccct
agtgtgcaccactctgaacagtcagtcattatgcctcctcatagtcaacacggaagcctt
ggcagaatgtcgcctcatcgcgtgggccaggccatttccatgggtcacctttctcaggga
gacgtacgagtcaacacgcctccgctatcagtgatgaactatggaattcaccctgacggc
cttgcttcatcttgggcacctgggcaacagcgccccacgtctcctcaggctgtggggaac
agagagatggttctcaaagtcaacccggccagcgcaagaggtcatgaagcaagcgaggag
gaagcagccaggcgctttcatcaggcgcttacaaggccgacggcgactcaactcaaaccg
gattcaataccagcagaataccgcagtgcacttcacagcgcactgccgctggagaggttt
aacatgcaaccaagagatatgcgcatgctgatataccacccacagggggaacgtccggct
gccgagctgcaccaggggcatatagcagaggctgtccctcccacctcaacgccaacgaac
attacagcctcgctttctccacgggcacacctcttgcagaaaggtatgtctgacaaggat
gccctaaagcagtcagaaataaagagggccacaccaccccctgggaaagacggaatgctg
ggaattcgtggtacagtgcctgccatggcctctcctaagcgagtacagctgatcacctca
gggccacccttttcggagtattcgaacatgtactccaacctgcgtaatgtgcactcgcag
tttcctgaaaattcacctatggggatcagccaacctcctcgcaacatcactccatcacag
ggtgcgcaagaatctgatcacaatcaagctcagactgaaaatcaagtcgagcatgttgga
caccagcaaatcaacatggtacagcttcttacgaggtatcctatcgtgtggcaaggtttg
ctggcattaaaaaatgaaactgctgcagtccagttgcattttgtgtgtggaaacaagtct
cttggactgcggtcacttcctgtcccagagactggacctcctctgcgtattgtccagagg
atgagattggaaacacaacaacttgaaggagtagctcgcagaatgactggcgagagtgaa
ttttgcctcctgcttgcaatgccttgcggcttaaatcaggaagatgtggtgacacagaca
caagtgctgaaatcagcttttattaactacctgaaagccaaactggctgcaggtatcatc
aacgtccccaatcctggctccaatcagcctgcctacgtgttgcagatcttccctccatgt
gagttttcagagtctcacctttcacggcttgctcccgacctcatcaaccagatctccagc
atttcacctcacctcatgatcgtcatcacctcggtctga
DBGET
integrated database retrieval system
