Clarias gariepinus (North African catfish): 128512321
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Entry
128512321 CDS
T10780
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04010
MAPK signaling pathway
cgar04137
Mitophagy - animal
cgar04141
Protein processing in endoplasmic reticulum
cgar04210
Apoptosis
cgar04217
Necroptosis
cgar04621
NOD-like receptor signaling pathway
cgar04622
RIG-I-like receptor signaling pathway
cgar04920
Adipocytokine signaling pathway
cgar05132
Salmonella infection
cgar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128512321 (traf2b)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128512321 (traf2b)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128512321 (traf2b)
09143 Cell growth and death
04210 Apoptosis
128512321 (traf2b)
04217 Necroptosis
128512321 (traf2b)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128512321 (traf2b)
04622 RIG-I-like receptor signaling pathway
128512321 (traf2b)
09152 Endocrine system
04920 Adipocytokine signaling pathway
128512321 (traf2b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128512321 (traf2b)
09171 Infectious disease: bacterial
05132 Salmonella infection
128512321 (traf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128512321 (traf2b)
04121 Ubiquitin system [BR:
cgar04121
]
128512321 (traf2b)
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128512321 (traf2b)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128512321 (traf2b)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
128512321 (traf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-RING_5
zf-C3HC4_2
TRAFD1-XIAF1_ZnF
zf-RING_UBOX
zf-C3HC4_4
ADIP
RING_XB3-XBAT31
Paramyxo_NS_C
ATG16
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
128512321
NCBI-ProteinID:
XP_053341516
LinkDB
All DBs
Position
24:complement(5553103..5576331)
Genome browser
AA seq
540 aa
AA seq
DB search
MTATGKNLHLSSLKMSIEGKWKGMARPSLPSSMESTLPGISRQVLSVSMEPKYQCQKCKE
VLRKPFQAQCGHRFCVYCFKQLTSSGPIPCEACRDEGIFEEEHSILDFSVAFPDNAARRE
IDGLPAKCPNDGCVWSGTLKDYEAQHEGRCEFERVKCEACQVFVLLSEKDRHNERECEAR
TLNCKYCKVSFSFKDIKAHDEICQKFPMQCKDCGKKKIPREKFQEHSKSCAKSKSACQFS
EIGCRVVVDNGKQHEHEQTSVMEHLRLMLSVVSSVRMRSEAAGEWQEDSGLGLYRGPEDA
ALPGAQAATGGPGMQQKMTALENIVCVLNREVERTALTLEALGRQHRLDQEKIENLTNKV
RQLERTLNMRDLQLAESEQNLRELQFCTYDGVFIWKISDFSRRRQDALAGRAPAMFSPAF
YSSKYGYKMCLRLYLNGDGSGRGSHLSLFFVVMRGKYDALLKWPFSQKVTLMLLDQNNRE
HIIDAFRPDISSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYVRDDTIFIKAIVDLTGL
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccactgggaaaaaccttcatttgtcatctttaaagatgagcattgagggtaaa
tggaagggaatggcacgtccatctttgccctcttcaatggaatcgactttaccaggaata
tctcgccaggtgctgtctgtgtcaatggaacctaaatatcagtgtcagaagtgcaaagaa
gtccttaggaagcccttccaagcgcagtgcggacaccggttctgcgtgtactgttttaaa
caactcaccagctccggtcctatcccctgcgaagcctgccgtgacgagggaatatttgag
gaagagcactctatactcgacttttctgtggcttttccagacaacgctgcacgaagggaa
atcgacggcttgccagcaaaatgcccaaacgatggctgtgtctggtctggtacattaaaa
gattatgaggcgcaacacgaaggcagatgtgaatttgaacgcgtaaagtgcgaagcgtgt
caagtcttcgtccttctcagtgaaaaagatcgccataatgagcgagaatgcgaagcccga
acccttaactgcaaatactgcaaagtctccttcagcttcaaagatattaaggcacatgat
gagatttgtcaaaaatttccaatgcaatgcaaagactgtggtaaaaagaagatccctaga
gaaaagttccaagagcatagcaaatcgtgtgcgaagtccaagtcggcctgccagttcagt
gaaattgggtgcagggtggtggtggataatggcaaacagcacgagcacgaacaaaccagc
gtgatggagcacttgcgcctcatgctgtccgtggtctcgtctgtgcgcatgcgctccgaa
gcagccggagagtggcaagaggactcggggttgggcctctaccgcggccccgaagacgcc
gctcttccaggagcccaggctgccaccgggggccctggtatgcagcagaagatgaccgcg
ctggagaacattgtgtgcgtgctaaacagagaggtggagcggacggcccttacactcgaa
gctctcggccgccagcaccggctcgaccaggagaagattgaaaacttaaccaacaaggtg
cgtcagttggagcggacgttaaacatgcgagacctgcagctggccgaatcagagcagaac
ttacgagaactgcagttttgcacttatgacggagtgttcatttggaaaatatcggatttc
tcacgtcgcagacaagacgcgctggctggtcgagcgcctgccatgttctcacctgcattc
tattccagtaagtacggctataaaatgtgtctgaggctgtacctgaatggcgatggttcc
ggcagaggctctcacctctccctgttctttgtggtgatgagagggaaatatgatgctctg
ctcaagtggccctttagccaaaaggtgactctaatgctcttggatcagaataaccgagag
cacatcatcgacgctttcaggcctgacatcagctccacgtctttccaaagacccatcagt
gagatgaatatagccagtggctgcccgctcttctgccccctggccaagctggcaggaaag
agctcctatgtcagagatgacaccatttttattaaagctatcgtagaccttacagggctt
taa
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