Clarias gariepinus (North African catfish): 128515158
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Entry
128515158 CDS
T10780
Symbol
otofa
Name
(RefSeq) otoferlin isoform X1
KO
K19949
otoferlin
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Membrane trafficking [BR:
cgar04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
128515158 (otofa)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128515158
NCBI-ProteinID:
XP_053345187
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Position
27:11742892..11815688
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AA seq
2013 aa
AA seq
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MALVVYLKSVSDLPGKGDRLAKVSFRGLSFYSRVLDNCEDEARFEEAFRWPIASKVDSNE
MLEINIYNYSKVFTNRLIGTFRMVLQKVVEEGHLEVSDTLTDDNNTSVLTSISIEIRYQP
MDGSMRVWSDGEFLDVPDDRDAMFQFETESLLSAQSQSSGTSPGRSTHSLPTLRKAGKGV
FSAMKLGKVRSSKDNHKKDDPAILETEDLDHKGMKRDPDTISLASVTAVTTNVSNKRSKP
DIKMEPVAGRPVDYQIRVMVIEARQLVGLNMDPLVCVEIGEEKKYTSMKESTNCPYYSEY
FVFDFHVPPDVVFDKILKLSVIHSKNLLRSGTLVGSFKLDIGTIYSQPEHQFYHKWAMLT
DPDDITAGCKGYVKCDISVLGKGDNIKTPHKTKEVDDDDIEGNLLLPEGIPTERQWARYH
VKIFRAEGLPKMNASIMANVKKALIGENRDLVDPYVQVQFGGQKGKTTVQKGTYEPSWNE
QVIFTEMFPPLCKRVKIQIRDSDKVNDVAIGTHFIDLRKISNDGDKGFLPTLGPAWVNMY
GSTRQYTLMDEHQDLNEGIGEGVSFRARLLIGLAVEILDTSTSDVNISTEVQVEPISNVS
EVSTGKVEEFFLFGSFLEATMIDRKIGDKPINFEVTIGNYGNQLDGVSKPVKRSKKGKRD
GEDEASELIHNSSDEDLEEESDLASLSSTPPMKPVITDSNYFHLPYFEKKPCIYIKSWWQ
DHRRRFYNSNIIDKIADKLEEGLNDVQEILKTEKAYPERRLRGVLEEMSTGCNRFLTLAN
KDQNQSGVTKLDRERLKSCLREMESMAQQAKTMRSQVKKNTVRDKLKLAQNFLQKLRFMA
DEPQHSIPDVFIWMISNNKRIAYARIPSKDILYSIVDEETGKDCGKVKAVFLRLPGKKSF
GPAGWTVQAKMELYLWLGLNKQRKDFLSGLPSGFEEDKAAKSTGLQSVPPVNLIYNSMQV
FQLRAHMYQARSLFAADDSGLSDPFARVFFSTYSQVTEVLSETLCPTWDQLLVFDNVELY
GEASELRDDPPIIVIEIYDQDTVGKAEFIGRTFAKPITKMVDEHYGPPRFPPQLEYYQIF
RGNSTAGELLAAFELLQIGPAGVKDLPPLDGPNDEDHGPILPVPLGIRPVLSKYRIEILF
WGLRDIKRINLTQVDKPRVDIECAGKGVQSALIQNYKKNPNFSTLVKWFEVDLPENELLH
PPLNIRVVDCRAFGRYTLVGSHAVSSLRRFIYTPPDKRSNNWANTARLANGLMALTNGTS
RSHPCSHPYSHSSGDIVVNMNPEAGFKKMDTVVKLDPTSDAVVKIDSNEDEKEKEKKKKK
KKKKGEEVEEEEQDERLLDWWSKYFASIETMMENLRAQEAALAEAEEREDMEIAAEVAEI
RVDQSHVKGAKTKEKNKAKKDKKKNQHNELMEKKEAKPNVEELVVFNKELEEEFDNFEDW
LHSFNLYKGKAGDDDDNSVMDDDRIMGRFKGSLCMYKLPLSEEITREPGFDPNMGMFQNI
PHNDPISVLVRIYIVKATNLHPTDLNGKADPYVVIKLGKTDIRDKENYISKQLNPVFGKS
FDIEAMFPMESMLTVSIFDWDLVGTDDLIGETKIDLENRLYSKYRATCGIASTYSVFGYN
VWRDPQKPTQILTKLCKDGKLDGPHYGPGGKVKVANRIFLGPTEIEDENGLKKPTDEHLA
LTALKHWEEIPQVGCKLIPEHVETRPLLHPEKPGIEQGRIEMWVDMFPKDSPAPGPALDI
SPRKPKKYELRVIIWNTDEVILEDDDYFTGEKSSDIYVQGWLKGQTEDKQETDVHYHSLT
GEGNFNWRFVFPFDYVVAEEKIVVSKKESLFSWDETEYKIPARLTLQVWDADHFSADDFL
GAIELDLNRFPRGAKTSKLCSLDMIVNEQDLPTISIFKQKRVKGWWPFMAQNENDEPELT
GKVEAELHLLTAEEAEKNPVGLGRNEPEPLEKPNRPDTTFLWFMSPLKAVRYLVCTRYKW
LIIKIILALLLLIMVILFIYSMPGYLVKKMLGA
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggctctggtggtgtatctgaaatcggtgtccgaccttcccgggaaaggagaccgactc
gccaaagtctcattccgaggtctgtccttctactcacgtgtcctggacaactgtgaggat
gaagccaggtttgaagaggcatttcgatggccaatcgccagtaaagtggacagtaatgag
atgttggagatcaatatatacaactacagcaaagtcttcactaacagattgatcggcacc
tttcgtatggtcctacagaaagtggtggaagaaggccatttggaggtgtctgacacactt
actgatgacaacaacacatcggttctgacgagtatttctatagagatcaggtaccagcca
atggacgggagcatgagggtgtggagtgatggggaatttcttgatgttcctgacgaccgc
gatgcaatgttccagtttgagacagagagtctgctctctgcacaaagccagagctccgga
acatcgcctgggcgatcaacccacagcctccccactttaagaaaagcaggaaaaggagtg
ttttcagccatgaagcttggaaaggtccgtagctccaaagacaaccataagaaagatgat
cctgctatcttggaaaccgaggatcttgaccataaaggcatgaagcgtgatcctgacact
atctccctggcctcagtcacagcagtgaccactaatgtctccaataagcgatcaaagcca
gatattaaaatggagcctgttgcaggaaggcctgtggattaccagatcagagttatggtg
atcgaggctcgccagctggtggggttaaacatggatcctttggtgtgtgtagagatcgga
gaggagaagaagtatacgtcaatgaaggagtcaacaaactgtccttactatagtgaatac
tttgtctttgacttccatgttccacctgatgtcgtatttgataagatcctcaaactctcg
gtcattcattccaaaaacttattgcgaagtggaacattagttggctcatttaaactagac
ataggaacaatttactcacaacctgagcaccagttctaccataaatgggccatgctgaca
gaccctgatgacatcacagcaggctgcaaaggctatgtaaaatgtgacatatcagtgtta
ggaaagggggacaacattaagacaccacacaagaccaaagaagtagatgatgatgatata
gaagggaatcttctgttgcctgaaggaatcccaacagagaggcagtgggcccgctaccat
gtgaagatcttccgggcagaaggcttgcccaaaatgaatgccagcatcatggctaatgtg
aaaaaggctttaattggagagaacagagaccttgtggacccttatgttcaagtgcagttt
ggcgggcagaaggggaaaaccacagtccagaagggcacttatgaacccagctggaatgag
caagtcatcttcactgagatgttcccaccactgtgtaaacgtgtgaaaattcagatccga
gattcagacaaggttaacgacgttgctattggaactcattttattgatctgcgcaagatt
tcaaatgatggagacaaaggcttcttacccacgctggggccagcctgggtgaacatgtat
ggctccacacgccagtacacactaatggacgagcaccaggacctaaacgaggggatcgga
gagggtgtgtccttcagggctcgtctcctcattggtcttgccgtggagatcttggacaca
tccacctcagatgtaaacatatccactgaggtccaggtggagcccatctcaaatgtttca
gaagtttcaactgggaaagttgaggagttttttctttttggatccttcttagaggctact
atgattgacagaaagataggggacaaaccaatcaactttgaagtcactattggtaactat
ggtaaccagcttgatggtgtaagcaagccagtaaaaaggagtaagaagggtaaaagggat
ggtgaagatgaggcgtctgagctgatacataactccagtgatgaagatcttgaggaggaa
agtgatctggcatctctgtcctccacccctcccatgaagccagtaatcactgacagcaat
tacttccatttgccatattttgaaaagaagccttgcatctacatcaagagctggtggcaa
gatcacagacgacgtttctacaactcgaacatcatcgacaagattgcagataaactggaa
gagggtctgaatgacgttcaggagattttgaagacagaaaaggcttatcctgaacgcaga
ctgaggggtgtcctggaggagatgagcaccggctgcaatcgatttctcacgctggccaat
aaggatcagaatcaatctggtgtaaccaaattggatcgggaaaggctgaagtcctgtcta
agagaaatggagagcatggcccagcaggccaagaccatgcgctcacaagtgaagaaaaac
actgtacgagacaaactaaaactggcccagaatttcttgcagaagcttcggttcatggct
gatgagccgcaacacagtattccggatgtcttcatatggatgataagtaacaataagcgt
atagcgtatgcacgcattccttcaaaagacatcctctactcaattgtagatgaggagacg
ggtaaagactgtgggaaagtcaaagctgtctttctccggttacctggaaagaagagcttt
ggcccagctggctggaccgttcaagctaagatggagttgtacttatggcttggtctgaac
aaacaaaggaaggacttcttgagcggcctgcccagtggctttgaggaagataaagcagct
aaaagcacaggcctacagtctgtgcctcccgttaacctcatctataacagtatgcaagtg
ttccagctaagggctcacatgtatcaggcccgtagtctgtttgctgctgatgatagtggc
ctgtctgatcctttcgcacgggtcttcttttccacttacagccaggtcacggaggtcctc
agtgaaactctttgtccaacgtgggaccagctgctggtgtttgacaacgttgagctttac
ggtgaagccagtgaactccgtgatgaccctccgatcatcgtcattgaaatttatgaccag
gatactgtgggaaaagccgagttcattggccgaactttcgccaagcccataactaagatg
gtcgatgagcattacggcccgccacgattccctccccagttggagtactaccagatcttc
agagggaactccactgcaggagagctgctggctgcctttgagcttttacagatcggacca
gcaggagtaaaagatcttcctcctctcgatgggccaaatgatgaagaccacggtcccatc
ctcccggtgcctctgggaatacgacctgtcctcagcaaatacagaatagagatcctgttc
tggggcctgagggacataaagaggattaacctgacacaggtggacaaaccgcgtgtggat
atcgagtgtgcgggaaaaggggtccaatcagccctcattcaaaactacaagaaaaatcca
aacttcagcactctggtgaaatggtttgaagtggacctcccagagaatgagttactacat
ccgcctctgaacatacgagtggtggattgcagagcttttggacgttacaccttagtgggc
tcacatgctgtctccagccttcgcaggttcatctacacaccgccggataagcggtccaac
aactgggccaatacagcaagactggccaatggcctcatggctcttaccaatggcacatcc
cgttcccacccctgctctcacccctactctcactcctcaggtgacattgtggtgaacatg
aaccctgaggctggttttaagaagatggacactgtggtcaaactggatcctacctctgat
gctgttgttaaaattgattcgaatgaggatgaaaaagaaaaagagaagaagaagaagaaa
aagaaaaagaagggagaggaggtagaggaagaggagcaagatgagcgtctgttggactgg
tggtccaagtactttgcatcaatagagacaatgatggagaatctgcgtgctcaagaagca
gccttggccgaggcagaagaacgagaagatatggagatcgctgcagaagtggctgaaatc
agagttgatcaatctcatgtgaaaggcgccaagactaaagagaaaaacaaagctaagaag
gacaaaaagaagaatcagcacaacgaactaatggagaaaaaagaggccaaacccaacgtg
gaagagcttgtggtgttcaataaggaactggaggaggaatttgataactttgaggactgg
cttcacagtttcaacctgtacaaaggaaaggctggagatgatgacgacaacagtgtgatg
gatgacgacaggatcatgggccgattcaaaggctcactgtgcatgtacaagctgcccctt
tcagaagaaatcaccagagagccagggtttgatcccaatatgggtatgtttcagaatata
ccacacaatgatcccatcagtgtcctagtgaggatttacattgttaaggcaacaaacctt
caccctaccgacctaaatgggaaagctgatccctatgttgtcatcaagctgggaaaaaca
gacatcagggacaaggagaattacatctcgaagcagctcaaccctgtttttgggaagtcc
tttgacatcgaggccatgtttccaatggagtcgatgctgacagtgtcaatatttgactgg
gacttagttggcactgatgacctgattggagagaccaagattgatctggagaaccgttta
tacagtaaatacagagccacctgtggcatcgcgtccacctactcggttttcggctacaat
gtgtggcgagatcctcagaaacccactcagatactcactaagttgtgtaaggatggcaag
ttggacggaccacattatggcccaggtggaaaggtcaaggttgcaaaccggatctttttg
ggcccaacagaaatcgaggatgaaaatggtctgaagaagccaacagatgaacatttggca
cttactgcactgaagcactgggaggaaattcctcaagtaggctgcaaactcatcccagaa
catgtagagaccaggcctcttctccacccagagaaaccaggaatagagcaggggcgaatt
gagatgtgggtcgacatgttcccaaaggattcacctgcaccaggaccggccttagacata
tcaccacgaaaaccaaagaaatatgagctcagggtgataatatggaacactgatgaggtg
attctggaagacgatgattacttcacaggggaaaaatccagtgacatttatgtccagggc
tggctaaaaggccaaacagaagataaacaggagacggacgtgcattaccactctctgact
ggagaaggaaactttaactggcgcttcgtctttccattcgactatgtcgtggctgaggag
aagattgtggtctccaagaaagagtccttgttctcctgggatgagacggagtacaagatt
cctgctcgcctcaccctgcaagtgtgggatgctgaccatttctctgcagatgacttcttg
ggtgcaattgaactcgatttgaaccggtttcctagaggagcgaaaacatcgaagctttgc
tcccttgatatgattgtcaatgagcaggacctgccgaccatctcaatcttcaaacagaaa
agggtgaagggctggtggccttttatggcacaaaatgaaaacgacgagccagagctcacg
ggtaaagtggaagcagagctccatctactgacagcagaggaagcagagaaaaatcctgtt
ggccttggaaggaatgagccagaacccctggaaaaaccaaaccggcccgacaccaccttc
ctctggttcatgagtccgctgaaggctgtgcgctacctggtgtgcacccgctacaaatgg
cttatcatcaaaattatcctggccctactgctgttgatcatggtgatcctctttatctat
agtatgcctggctacctggtcaagaagatgcttggtgcatga
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integrated database retrieval system
