Clarias gariepinus (North African catfish): 128515820
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Entry
128515820 CDS
T10780
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128515820
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128515820
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
Motif
Other DBs
NCBI-GeneID:
128515820
NCBI-ProteinID:
XP_053345999
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All DBs
Position
28:6973601..7000309
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AA seq
1623 aa
AA seq
DB search
MSKKRKVSLMEVWLRNQAAHLKEAENLKLWPRQLALLREPEVVSSLVQQNVKMVSLLPPA
GTDVFRRFTPESLADCEHLKTKNDAERVHKKEIPDEELSKPSKDLEAGKSLPFIYGDPPP
ELLNIPLEELDPYYRSKKTFNVISKGNTINRFNVDPACYILSPLNPIRRVAIRIHLHSLF
SIFIMLTILLNCFFLTINRMPQWGNIMEYVFIGIYTFEALIKVLSRGFCIGHFTYLRDPW
NWVDFIVVIMAYITVFAEIGKVSFLNPLRVIRVLKVFTITPGIKNAVGSVVQSVKKVGDV
VILIVFCLSVFALLSMQLFMGNLRHKCVLWPPASSNDTADTNSTFDFEEFRNDQSNYYYL
RDHIDPLLCGNSSDSGRCPEGYICMKAGRNPNYGYTNYDTFGWSFLALFRLMTQDFWENL
FQLTLRSAGKTYLIFFMVIMFAVSFYLISMILAVVAMACAEKNEATIAEAKRKKKAYVKI
MEQLKKHSESREVAESNGSKGTMDLNEVPESEELKRRCSPCWYKFADIFLKWNCCTPWVR
FKKWLYFIVMDPFVDLGITICVILNVVFLALEQYPMTVELNDVVALGNLVFLGIYTLEMI
LKIIAMDPYHYFKAGWNRFDSFIVITGLLELFLADVEGLSVLRVFRVMRICKLGKPWSTL
NFVFMIIGNALGALRSLSFLLAIIVFIFAVAGMQLFGENYKDCVCKIAADCGLPRWHMTD
FFHSFLIVFRILCGEWIETMWDCMEVANPTMCITFYMMVLIIGKVVLLNLFLALLLSSFS
GDNLALSNGEVNNLQIARSRISRGINRVKAHISHLFGRKSREDEKKGKKIGLNYMDKDGA
EDETKVELKKLNDPLKITLVPIAKGETDFESPCLDDTVSENEEKIDEKKKLKEENDLSSC
STIDKVPEVEKADSNDETDQMTPGDCCSEKCIRCCPCLNLDITKGKGKKWWNFRKICYAI
VEHSYFEAFITLMIFLSSIALAFEDIYMEQRTVIKIILEYADQVFTYIFVIEMLLKWFAY
GFKTYFTNAWCCLDFFIVNVFLIGMTSNFLGYSAFKHIKPLRPLRILSRFEGMRVVVKAL
VGAIPSMFKVMVAWIIFWLIFSIIGVNLFAGKFHYCFNTTSEEFFTIDVVNNKTECLELI
HENNAMDDVRWMNIKINYDNVAMGFLALFQVATFKGWMDIMYSAVDSRMVEDQPQYEANL
YMYEYFIFFIIFGAFVTLILFIGIIIDNFKKQKLKIRKNPFITESQKKYCDALKKRGCNK
PQKQIPRPKNCLQVFIYNIVTKESFEILMVGLIFLHMVALMVETVDMSFETETILFMIDF
IFNVIYTLECVFKLIALRKYYFHIGWNIFDFILVLLSILGMFLADIFEVYLGSSRVIYII
RLARIGRILHLIRPAKGIRALLCSVMVSLPAVVNICLVFSVIMFIFSICGMYNFAYVKKS
AVIDDMFNFETFGNSLICLFITATTAGWDGFMNSIITRPPDCDPDFYNPGSDVKGNCGNT
AVGIIFFCTYVVISLFLVVNMYIVVILENFNIATEESSESLCEDDAKIFESNSEEKFRVN
KLESSTLEPEQEEVAAKVIQRAYREYKLKSPCEKASGGVLQNKVTASVTAPGTTSEKNVQ
SVV
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaagcgaaaggtctcactcatggaggtgtggctcaggaatcaggcagcacac
ctgaaggaagctgaaaatctgaaactatggcctcgacaactggcgttgctaagagagccc
gaagtggtttcctctcttgtccaacagaatgtgaagatggtgtctttgctccccccggca
gggaccgatgtgttccgccgtttcacaccggagtcccttgctgattgtgagcacctcaag
accaagaacgatgctgaacgggtgcacaagaaagagatccctgatgaggaactgtccaaa
ccgtccaaagacctggaagctggaaaatctttaccttttatctatggagaccctccacct
gagctccttaacatccccctggaagagctcgatccctactacaggtccaagaaaactttc
aatgtgatcagcaaaggaaatacaatcaataggttcaatgtggatccagcctgttacatt
ctcagtccccttaaccccatccgaagggtcgccatccggatacacttacactcattgttc
agcatattcatcatgctaacaatcctgttgaactgttttttcctgacgataaaccgtatg
ccacagtgggggaatattatggagtatgtcttcataggtatctacacatttgaggctcta
attaaagtcttgtccagagggttctgtattggacacttcacgtaccttcgagatccatgg
aattgggtggattttattgtggtcatcatggcgtacatcacagtctttgcagagattgga
aaagtctcatttttgaaccccttgcgtgtgattcgtgtcctgaaagtattcactataact
ccaggtataaaaaacgccgttggttcagtggttcagtccgtgaagaaggtgggagacgtc
gtaatcctgatcgtcttctgtctcagcgttttcgccctcttgagcatgcagctgttcatg
ggaaatctgcgccataaatgtgtgctgtggcctccagcaagctccaacgatactgcagat
acaaacagcactttcgactttgaagaattccgcaacgatcaatcgaattactactatttg
cgtgatcacatagacccactgctttgtggaaacagctcagattctgggagatgtcctgag
ggatacatttgtatgaaagcaggaaggaatccaaattatggatacaccaattatgacacc
tttggttggtcctttctcgccctcttccgactcatgacacaggacttctgggaaaacttg
ttccagctgactctccggtcagcagggaagacctacctgatcttcttcatggtcattatg
tttgcagtgtctttctacctgatcagtatgattttggctgtggtggcaatggcatgtgca
gagaagaacgaagcgactatagctgaagctaaaaggaaaaagaaggcgtatgtcaagatc
atggagcaactcaaaaagcactctgagtctagggaggttgctgaatcaaatggatccaaa
ggaactatggacctaaatgaagtacctgaatcagaagagttgaagagacgatgctcacct
tgctggtacaaatttgcagacattttcctaaagtggaactgctgtacaccctgggtcaga
tttaaaaaatggctttacttcattgtgatggatccttttgtggacttgggcatcactatc
tgcgtcatactaaacgttgtgtttttggcccttgaacaatatccaatgactgtagaatta
aatgatgtcgtagctcttgggaatttggtgttcctaggcatctatacattggagatgatc
cttaaaatcatagccatggacccataccactacttcaaggctggatggaataggtttgac
agctttattgtgattaccggccttttggaactcttcttggctgatgtagaaggactgtct
gtgctccgcgtcttccgagttatgcgtatctgtaagttgggaaagccatggtctaccctg
aacttcgtgtttatgatcattggtaatgctctgggtgccctgaggagcctgagcttcctc
ctggccatcatcgtcttcatctttgctgtggcgggcatgcaactgtttggggaaaactac
aaggactgtgtttgtaaaattgcggcggactgtggacttccacgctggcacatgacagac
tttttccattcattcctaattgtgtttcggatcctgtgtggtgagtggattgaaaccatg
tgggactgcatggaggttgcaaaccctaccatgtgcattaccttctacatgatggtcctt
ataattggaaaagtggtgcttttgaatctcttcctggcattgctgctcagctccttcagt
ggagacaatctggcattatccaatggtgaagtgaacaacctgcaaattgccagatcaaga
atcagcaggggcattaacagggtcaaggcacacataagtcatttgtttggcaggaaatca
agggaagatgagaaaaaggggaaaaaaataggcttgaactacatggacaaggatggggca
gaggacgagacaaaggtggagctgaaaaagcttaatgatcctcttaaaataactcttgtt
ccaatcgcgaaaggagagactgattttgaaagcccttgtcttgatgacactgtttctgag
aatgaagagaagatcgatgaaaagaagaaactgaaagaagaaaatgacctctccagctgc
agcactatagacaaagttccagaggtggagaaggcagattcaaatgatgaaacagatcaa
atgaccccaggggactgctgctcagagaaatgcattagatgctgcccatgcctaaatttg
gacatcaccaagggcaaaggaaagaaatggtggaacttccgtaagatctgttatgccatt
gtggagcacagctatttcgaagccttcatcacactcatgatatttctcagcagcattgcc
ttggcatttgaagacatttacatggagcagcgaacggtcattaaaatcatccttgaatat
gcagatcaggtcttcacctacatttttgtcattgagatgctcctgaaatggtttgcgtat
gggttcaagacttatttcaccaatgcttggtgctgtctggacttcttcattgtcaatgtc
tttctgatcggcatgacgtcgaactttctgggttactccgcattcaaacatatcaaaccc
ctgaggcctcttcgcatcctgtccagatttgaaggaatgagggtggtggttaaagccctg
gttggtgccattccctccatgtttaaagtgatggtggcctggataatcttctggttgatc
tttagcataataggcgtaaacctgtttgctggaaaattccactattgctttaacacaacc
tctgaagagtttttcacaattgatgtggtgaacaataaaaccgaatgtttagagctgatt
catgagaacaatgcgatggatgatgtgcgatggatgaacataaagatcaactacgataac
gtggccatgggcttcctcgccttgtttcaagtggcaacatttaaaggttggatggacatc
atgtattctgctgttgattctcgtatggtggaggaccagccacaatatgaggcaaacctc
tacatgtacgagtactttatttttttcatcatctttggggccttcgttaccctcatctta
ttcatcggtatcatcattgataacttcaagaaacaaaaattgaagataagaaaaaaccct
tttatcacagagagccagaagaaatattgtgacgctttgaaaaaacgtggctgtaacaaa
cctcagaaacagattccacgccccaagaattgtttgcaagtcttcatctacaacattgtc
acaaaggagtcgttcgaaatcctgatggtgggcttgatctttctgcacatggtcgccctg
atggtggagacggttgacatgagcttcgagacggagactatcctgtttatgatcgacttc
atctttaacgtcatttacactttagagtgtgtgtttaagctcatcgccctgcggaagtat
tactttcacattggatggaatatttttgattttattctggttttgctttcaattttgggc
atgttcttagcagacatctttgaggtgtaccttgggtcttctcgggttatctatatcatc
cgacttgcaagaattggccgcattctgcatctgatccgacctgctaaaggcatccgagct
ctcctgtgctccgtgatggtgtccctccctgccgtcgttaacatctgcctcgtcttctct
gtgatcatgttcatcttctccatttgtggcatgtacaactttgcctatgtaaaaaaatct
gccgtcattgatgacatgttcaattttgagaccttcggaaacagtctaatatgtctgttc
ataactgcaacaactgctggatgggacgggtttatgaactctatcattaccagacctcct
gactgtgacccggacttttataatcctggctcggatgtaaagggtaactgtgggaatact
gctgtgggaataatcttcttttgcacttacgtagtgatatccctgtttctggtggtcaac
atgtacatcgtcgtcattctggagaacttcaacattgcaacagaggagagcagcgagtct
ttatgtgaggacgacgccaagatattcgagtcgaattcggaggagaaattcagggtgaac
aagctggaaagcagcactcttgaaccagagcaggaggaagtggctgctaaggtcatccag
agagcctaccgcgaatacaaactcaagtccccgtgtgagaaggcgtcgggtggagttctg
cagaacaaggtcaccgcctctgtcactgctcctggcacgacctctgagaaaaacgtgcag
tcagtggtctag
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