KEGG   Clarias gariepinus (North African catfish): 128515867
Entry
128515867         CDS       T10780                                 
Symbol
tnfa
Name
(RefSeq) tumor necrosis factor a (TNF superfamily, member 2)
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar04010  MAPK signaling pathway
cgar04060  Cytokine-cytokine receptor interaction
cgar04150  mTOR signaling pathway
cgar04210  Apoptosis
cgar04217  Necroptosis
cgar04350  TGF-beta signaling pathway
cgar04620  Toll-like receptor signaling pathway
cgar04621  NOD-like receptor signaling pathway
cgar04622  RIG-I-like receptor signaling pathway
cgar04625  C-type lectin receptor signaling pathway
cgar04920  Adipocytokine signaling pathway
cgar05132  Salmonella infection
cgar05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    128515867 (tnfa)
   04350 TGF-beta signaling pathway
    128515867 (tnfa)
   04150 mTOR signaling pathway
    128515867 (tnfa)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    128515867 (tnfa)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    128515867 (tnfa)
   04217 Necroptosis
    128515867 (tnfa)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    128515867 (tnfa)
   04621 NOD-like receptor signaling pathway
    128515867 (tnfa)
   04622 RIG-I-like receptor signaling pathway
    128515867 (tnfa)
   04625 C-type lectin receptor signaling pathway
    128515867 (tnfa)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    128515867 (tnfa)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    128515867 (tnfa)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    128515867 (tnfa)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:cgar04052]
    128515867 (tnfa)
   00536 Glycosaminoglycan binding proteins [BR:cgar00536]
    128515867 (tnfa)
Cytokines and neuropeptides [BR:cgar04052]
 Cytokines
  Tumor necrosis fators
   128515867 (tnfa)
Glycosaminoglycan binding proteins [BR:cgar00536]
 Heparan sulfate / Heparin
  Cytokines
   128515867 (tnfa)
SSDB
Motif
Pfam: TNF ASL_C Arm_4 Beta_helix DUF1634 Pox_LP_H2
Other DBs
NCBI-GeneID: 128515867
NCBI-ProteinID: XP_053346077
LinkDB
Position
28:9205745..9207198
AA seq 230 aa
MASDSQVVLDVDGPKVMIVREKATSASRVWRTCGVLLAVALCAAAAVCFTLNKTQKNEPD
ETQEIKHTLRQISETAKAAIHLSGQYNPLVSNSSVEWFDNADQSFSSGLKLEGNEIKIFR
KGLYFVYSQASYSLNCKAEGEEDEGEVMHLTHKVQRWSDAYNSYKPLLSSIKSTCKKTRK
DGATKWFGAIYLGAAFNLEAGDRLRAVMDHKLLPHVNSEGGKTFFGAFSL
NT seq 693 nt   +upstreamnt  +downstreamnt
atggccagcgatagtcaggtggtgttggatgtggacggacccaaggtgatgatcgtccgc
gagaaggccacttctgcttcacgggtttggagaacgtgcggagtcctgctcgccgtggct
ctctgcgccgctgccgccgtctgctttacgctgaacaagacgcaaaaaaatgaaccagat
gaaacccaagaaatcaagcacacgctgagacagatctccgagacggcaaaggctgcgatt
catctctcaggtcaatacaacccgctggtttccaacagttctgtggagtggttcgacaac
gcagatcagtctttctcttcaggcttaaaactggagggcaacgagatcaagattttccgc
aaaggcctctacttcgtctacagccaggcgtcctacagtctgaactgcaaggctgaaggc
gaggaagacgagggcgaggtgatgcacctgacccacaaagtgcagcgctggtctgatgcc
tataactcatacaagccactgctgagcagcataaaatccacctgcaagaaaacacgtaaa
gatggcgccacaaagtggttcggtgctatctacctcggagccgctttcaacctggaggcc
ggagaccgcctgcgcgccgtgatggaccacaagctgctgccccatgtgaatagcgaagga
gggaaaacgttcttcggagcgttctctttataa

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