Clarias gariepinus (North African catfish): 128519127
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Entry
128519127 CDS
T10780
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04010
MAPK signaling pathway
cgar04120
Ubiquitin mediated proteolysis
cgar04140
Autophagy - animal
cgar04144
Endocytosis
cgar04620
Toll-like receptor signaling pathway
cgar04621
NOD-like receptor signaling pathway
cgar04622
RIG-I-like receptor signaling pathway
cgar05132
Salmonella infection
cgar05168
Herpes simplex virus 1 infection
Brite
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128519127 (traf6)
Membrane trafficking [BR:
cgar04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
128519127 (traf6)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
128519127 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128519127
NCBI-ProteinID:
XP_053348695
LinkDB
All DBs
Position
3:complement(10693244..10701117)
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AA seq
544 aa
AA seq
DB search
MACGDMHKSNPDEYPFSRCMAEMEKERESYLSPTENPSTLSVSSGIQAEQQGYDVDFDPP
LESKYECPICLMGLRSAVQTPCGHRFCNSCIKKSIRDTGQKCPVDNEVLTEDQLFPDNFA
KREILSLTVRCRNVGCNEIMELRRLENHLTHCKFATVPCPQCKEPVWKNSVEEHMNQDCS
QRLITCPDCAESIIYATKQFHEQMCPFVNTVCEYCNMDFIRGQLLSHCATDCLKAPVACT
FSMFGCQEKMPRNDLALHMQEFTQMHMRYMAEFLRNQALNGISPLTSSQGPSCLPPSERG
ASSRVGETCQCSQEMQQLRETVVELEGRLVRQDHQLRELSIRNETQVTVHTQVTELRKKL
VLLEEKMHELEAQQYQGVYVWRIEGFSAHLHQQENGQPVVLHSPPFYTGKPGYKLCLRLH
LQTPSAPRCSNYISLFVHTMQGEFDSQLPWPLQGTIRLSVLDQAEGQNHVEVMETKPDLQ
AFQRPTVLRNPKGFGYVTFMQLQALRQRGFVRDDVLLVRCEVMPRFDTSLRREGVQPRGP
EPSL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgtggtgacatgcataaatccaatcctgatgagtatccattctcaagatgcatg
gctgaaatggagaaagaaagggagtcgtacctaagccctacagaaaacccatccacgctc
agtgtctcatccggcatccaagcagaacagcaaggctatgatgttgactttgacccccca
ctggagagcaagtatgaatgtcccatctgtctgatgggattaaggtcagccgtgcagaca
ccatgtggtcaccgcttctgcaacagctgtattaaaaaatccattagggacacagggcag
aaatgtccagttgacaatgaggtgctgacagaagaccagctttttccagataactttgcc
aagagggaaattctgtctctcaccgtgcgctgccgcaatgtgggctgtaatgagataatg
gagctcagacgcttggagaatcacttgacacactgcaaatttgccacagtaccttgcccc
cagtgtaaggagcctgtatggaagaatagtgtagaggaacatatgaaccaggactgttca
cagcgcctcatcacatgccctgactgtgcagagagcatcatctatgctacaaaacagttt
catgagcagatgtgtccatttgtgaatacagtgtgtgagtactgtaacatggatttcatt
cgtggtcagttgttatcacactgtgcaacggactgcctgaaagctcctgttgcctgtact
ttcagcatgtttggttgtcaagaaaagatgccaagaaacgacctggcacttcacatgcag
gagtttacacagatgcacatgaggtacatggccgagttcctgaggaaccaggctttgaat
ggcatttccccccttacttcttcccaaggcccttcctgcttacccccatctgagcgtggt
gcttcttccagggtgggggagacatgccagtgttcccaggaaatgcagcagctacgtgaa
actgttgtggaacttgagggccgcctggtgcgccaggaccaccaactacgggagctgagc
attcgcaatgaaacacaggttactgtgcacacgcaggttactgagctacgcaaaaagctg
gtattgctggaagagaaaatgcacgagctcgaggctcagcagtaccaaggagtctatgtg
tggcgaatagagggattctcggctcaccttcaccaacaggaaaacggacaaccagttgtg
ctccatagcccaccattctacacaggaaaaccgggctataagctgtgcctgagactgcac
ctgcagacaccaagtgcaccacgatgctctaattacatctcgttgtttgtgcacacaatg
cagggtgagtttgatagccagctcccatggcccctgcagggcaccatccggctgtctgtg
ctggaccaggccgagggccaaaaccatgttgaggtaatggagaccaaaccagacctgcaa
gccttccaaaggcccacagtgctgcgcaatcccaaaggcttcggctatgtcaccttcatg
cagctgcaggcactgcgccagcgaggctttgtcagagacgatgtgctgctggtacgctgt
gaggtcatgccacgttttgacaccagcctcaggagagagggtgtgcaacctcggggaccg
gaaccatccctctga
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