Clarias gariepinus (North African catfish): 128519609
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Entry
128519609 CDS
T10780
Symbol
smcr8a
Name
(RefSeq) guanine nucleotide exchange protein smcr8a
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128519609 (smcr8a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128519609 (smcr8a)
Membrane trafficking [BR:
cgar04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
128519609 (smcr8a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
128519609
NCBI-ProteinID:
XP_053349367
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All DBs
Position
3:complement(20755885..20761022)
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AA seq
866 aa
AA seq
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MIGSPDVVAFTKDDDFEDSYTDPCLLPEEFSVPLFPHANSNPWLKTSYAKFAKDFILISE
FSEQVGPQPLLTIPDDPKVCGTFDLNYFSLRIMSVDYQASFVGHPPGTSYPKLNFVEDSK
VVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADERKIMQQFQLLSSGFSRASEC
LKSGNRKAFANELEKKLRDLEYTRSVLHRETEVQKTNSGCYSTQVIEKANELANVERSIY
EHKDLLKQITSYPNSKRKDADQERYEAETRADTSEPDHTLSSNHSGDGDKHVVTDGDAQP
PSYIPQLIKAKSAKCFDKRLKTLEELCESDFFHHTMDQLSAIEKAFRGDLCFLYTSQVDR
ALLSKQKITSFLFEYEGDDDEDLSSRNLYNPNRSVFSGQPLVLESYAGYAERTENKLVLE
TTEGPPESSTSDVTQETSEDANDTEMKGSFSSDRSIEAFANFSPGNHDGFPRTHTNVACT
VTSSEKEENAPSVGKASSSGEHEPDLDHGETEHLIQMDAACCMGQDGFIYEEPEPVLERR
EDTVVKCEPLSLLQRDPTVQDDYVLGETPQAVPSPSMRLMLPELNPSPVCEELVRLTVED
VSDNGSYMSTSTSSDRAASPFTYGSPITLKQKKKAGHSALRFIRQYPFAQQAIFCLLSGR
TLVVLGADEGTVRKLVSALLIFVPNLGKCGETVQPWLSTSFQLSDLQRWKLIGLQRVVSP
AGTSLLHSLSRYSRYIGILDCDNKTLRCPAYKGTIIGHMADHRTQIKRGSTYYLHVQSVL
TQLTAKAFLYTFCHHLHLPVSTDQDAESVVRRRTNFLLQLGYTEEESKIIRFLSELVKQH
YLQGPFKGVSQSHFSFSYTTSYLYKI
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgatcggatccccagatgtggtggcttttaccaaagatgatgattttgaagattcctac
acagacccgtgcttgctcccagaggagttttctgtgcctttgtttcctcatgcaaactcc
aatccatggttaaaaacatcctatgcaaaattcgccaaggatttcatccttatctcggag
ttttccgagcaggtcggtccacagccgttactcaccatcccggatgatcccaaagtctgc
gggacgttcgaccttaattacttttctctacgcatcatgtccgtggactaccaggcttcg
ttcgtgggacacccccctggcacgagttatcccaagctcaactttgtcgaggactcgaaa
gtcgtcctgggcgattccaaggaaggagcattcgcctacgtgcaccacctgaccctctac
gacttggaggcgcgcggcttcgtgcgtcctttctgcatggcgtatatctctgcggatgag
cgaaagatcatgcagcagttccagctgctctcgtctggattttcccgggcttccgagtgc
ttaaaatcagggaacaggaaagcctttgcgaacgaattggaaaagaaactgagggacctg
gagtacacgcggtccgtcctgcacagagagaccgaggtgcagaaaaccaacagcggctgt
tattccacgcaggtcatcgagaaagctaatgaactggccaacgtggagagatccatctac
gagcataaagatttgttgaaacagatcacgtcttatccaaacagtaaaaggaaagacgcc
gatcaggagcggtatgaagcagaaactagagctgacacaagcgagcctgaccacacactg
tcttctaatcattccggggatggagataaacatgtggtaacggatggtgatgctcagccg
ccgtcttacattccccagctgatcaaagcgaaatctgcgaaatgtttcgataaacgatta
aaaaccctggaagagctttgcgaatctgactttttccaccacaccatggaccaactgagc
gcgatcgagaaggcattccgaggtgatctttgcttcctttacaccagccaggtcgatcgg
gctctcctgagtaagcagaagatcaccagctttcttttcgagtacgaaggcgatgacgat
gaagacctcagctccaggaacctctacaacccaaaccgctctgttttttcgggtcagccg
ttggtccttgagtcctacgccggttacgctgaaagaactgagaataagctggtacttgaa
acgacggaaggacctccagagtccagtacctcagacgttacgcaggaaacctcagaagac
gctaacgacacagaaatgaaagggagcttcagcagtgaccggagcattgaggcttttgca
aactttagcccgggaaatcacgacggttttccgagaacgcacacgaacgtggcttgtact
gtgacctcatctgagaaagaagaaaacgctccgtctgtcggaaaggcgtcatcctcagga
gagcacgaacccgacctcgatcacggtgaaacagaacatctgattcagatggacgcagca
tgctgcatgggacaggacggtttcatctacgaggagcctgaaccggtcctggagcgtcgt
gaggacacggttgtcaagtgcgagcccctgtccctgctccaaagggaccctaccgtgcaa
gacgactacgtgttgggagagacaccgcaggccgtaccgagtcccagcatgaggctgatg
cttcctgaactcaaccctagccctgtgtgtgaggagctggtgagactgaccgtggaagat
gtttccgacaacggcagttacatgagcacctcgaccagctccgacagagcggcctcgcct
ttcacctacggcagccccatcacgctgaagcagaagaagaaggcgggccacagcgccctg
cgcttcatcaggcagtacccgtttgctcagcaagccatcttctgcctgctaagcggaaga
acgctggtggttctgggagctgacgaaggtaccgtgaggaagctggtgagcgcgttgttg
attttcgttccaaacctcgggaagtgcggagaaaccgtgcagccgtggctctccacgtcg
tttcagctaagcgacctccagagatggaaactcattggattgcagagggtggtctctcca
gcgggtacgagcttgctccattccctgagccgctacagccgatatatcggcatcctggac
tgtgacaacaagacgctccgatgccccgcctacaaaggaacaataatcggtcacatggcg
gaccacaggacgcagatcaaacgcggcagcacctactatctccacgtgcagagcgtatta
actcagctcacagccaaggccttcctttacactttctgccaccacctccacctgcccgtc
agtacggaccaggacgccgagtcggtggtgcggcgcaggactaacttcttgttgcagctc
ggctacaccgaggaggagagtaaaataatccgcttcttgagcgagctggtcaagcagcat
taccttcaggggccttttaagggggtcagccagtctcacttcagtttcagttacaccacc
agctatttgtacaaaatctaa
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