Clarias gariepinus (North African catfish): 128524841
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Entry
128524841 CDS
T10780
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
128524841 (smchd1)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
128524841 (smchd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128524841
NCBI-ProteinID:
XP_053353443
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Position
1:complement(36839011..36882138)
Genome browser
AA seq
2006 aa
AA seq
DB search
MCKDILLAALVQVKPAQTGNMAESGVPPAEASQGSRSVCIFDCRPNSKELPELMLDIGGM
NYKQFLCAVRKEFSISVNESFVITTTDRREIDSDVYDELSNGKTLYLLQSVDQELSMATE
EQIKYVPHFHTIVQSGQYEYYASEGQKALPYAFAELIDNALSATSNNPETRNIDIRLFFD
ESQGGPAVVVMDNGRGMTSKELNNWAVYRLSKFNRDDRAFKSDEPGYVRPSAVPRSLNSD
ISYFGVGGKQAVFYIGQSVRIISKPVGSPDVHEFVMSKEDFQQKEKNNKEIYSGIIRNRK
PGDDSHVKVDEERFLQTLVLEEKGKDSFTNIVITEIQPEHVAYLKQDFAIWTRELAHIYH
YYVHGVHGNDMRHRRSTETVSNIDIQICLFDRYSRLPRLLNLKEIDNDMQTLYINSSVAE
FEFKASKEGDAKVEGLLRYHPFLYDKETYPEDPYASTPATENDEDCFVTHAEGRGKRPIF
ECFWNGRLIPYSSVNEFEWCTRPKKVGSIPLECYNRISGVLFTNDRFQVSTNKLTFMDLE
LQLRDKDTIFTRVLNGQEQRVKINREFTNWLKECHEKYDKQVKFLGFQGEIVRTDVQPKR
MQSPWARYKAIVWDGKTYKSGQQVKIMKPQPYVYGTIDQFLLYGDHDGDVYATGGHVQIT
LEPKEIFNEVKTFPIPKIDRQATDADIKGYIENELSKLPDKLRVTWPEGNPWPEKIIQPA
GTPMGPIQVEILNKKGERMSRLPVSTVNSKKLQIDLKVLWHSSTGKIQTNSHTGVHSKWE
YWFRKMENLNKLGKYTLHLQTMLSDSDSPSMWAGRRLPHYTLNFSIKENSAAAFTVAVVP
PFVQVGVPFTLPLQFTDEFNHPTQPPSDIKPQLECSSLKLSYEQTITSGSTFTIKDLSAM
GKVTNHQDKMYTIKVTIPGLKPDTQSFQISARPGPPHQLVVKPEDEVCIENGTPAGFSVD
VQDEFNNITTHSKLIVHCQLIGGSDLPADSVDCSNTGSGLLLAKPVKLKNVTTERTLTAK
FSVPNQKAVACVERTVRISPSTRVYRIEVYRQEDDSDDVIILQNKERINWTAGDTLGCLH
FKLFDEGGRQVALTQKLAHNIKVNWAADVKAAELTKGRLPSICVPTKVHGEQFYQVSFQD
QQTVDTSFTIFPRPDEPERLRVTLSETTVRMGETLSENIYIEVVDQYGNKTDALNAGSMK
EVGVSADKLDESALNFTWQDKIGTMVVTGIRFSEGLPGPRELCFKYQNFKEFVRITVTSG
PPTKLVLLEPPELPLRVFNGQGLDTPFQLQLCDAWGNPAADQRVVISVKSRSSQLKVKCS
VMSQTVDTEGKASFMLETISAKIGEHELEFKGSISKTNTIHGPVIKLCVVPDPNNPVKLN
VEYNNDGILRAGDIFPVFKVTVLSEEGGPVKNVSPCSLSMLLWEGLASGCRPPLGVMALK
CSKPKDKDNDDHFYFRDKEIPLRAGKYMVQFLFAVGSGKSLWSSQIALNVVANKPVKLVP
DTPAATPVVSNSSTLADRTLLDFLCLHIMDEHNNPAGLGLNGKVILTVTTPDGDDAEELP
MFESKAKSLTYDLINGKTIIKDLALMENSPGADGAEYTLQFHPVLQGPKSLLNIPPFKLP
FRFYNDAENQKVMATMSKKKDQLSQSIVVYKEILETNRQLTTELTGQMQDAVNKESQLKD
ELNKNGVDVSRITDVASVEGLVAKVTADLERIKNQPRRKCTIPDPFRGSQDVLGKVAHLA
LVKDDDAAKVISWHLLGDMDCVVTVTTAAAKKIYDETQGRQQVMPIETIFWKPNNRPLPH
IRNGQSLFRPLGSPVFVRDLLIFPEHAENCSKVFSNLLGDTILVDDLDSANHYRKGVVQS
KMQCPTLLTRQGERIRSNGKFGGLQNKAPPIEKLRGHVFGAPLPPEYHTTCKQKELLQQY
SIAAQKALKVKADYDYHMEYLQSPKMKQTKQELQQQEKEFREIEKKLCSTPVRTSPGSLK
RNLQDELDESLPAKRIRRKTRKLLDS
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaaagacattttattagcagccttggtacaagtgaaaccagcgcaaactggaaac
atggcggaatcgggagttcccccagcagaggcttctcagggcagccggtcggtgtgtatc
ttcgactgtcgcccaaacagtaaagagctccctgaactgatgctggatatcggcggcatg
aactacaagcagttcctgtgtgcagtgcgcaaggaattttctatctcagtaaatgaaagt
tttgtgatcactactacagatcgcagggagatcgattcagatgtttacgatgaactgtca
aatggaaaaacattatacctgctgcaatctgtggatcaggagttgtctatggcaactgaa
gagcaaattaagtacgttccccattttcacaccattgtgcaaagtggccagtatgagtac
tatgccagcgaaggacagaaggcactaccctatgcctttgctgagcttattgataatgca
ctttctgcaacctcaaataatcctgaaaccaggaacatcgacataagattgttttttgat
gagtctcaaggtggcccagccgttgtagtgatggataacggccgtggaatgacctctaaa
gagttgaataactgggcagtgtatcggctttccaagttcaatcgtgatgatcgtgcattt
aagagtgatgaaccaggatatgtgcgtcctagtgcagttcctcgcagtctgaacagcgac
atctcttattttggtgttggaggcaaacaggcagtgttttatataggccagtctgtacgg
atcataagtaagcccgttggctctccagatgtacatgagtttgtaatgtctaaggaagac
tttcagcagaaggagaaaaataacaaagaaatctattcgggtatcatccggaacaggaag
ccaggagatgattctcatgtgaaagtggatgaagagcgttttttacaaactctagttctg
gaagaaaaaggcaaggacagttttaccaatatagtcataactgaaatccagcctgaacat
gttgcctatttaaaacaggatttcgctatctggaccagagagctagcgcacatctatcat
tactatgttcacggtgtacatggaaatgacatgagacacagacgatccactgaaactgtg
tcaaacattgacatccagatttgtctatttgatcggtactctcgcttgccaaggctactt
aatttaaaggagatagataacgacatgcagactctttacataaactctagtgtggcagag
tttgaatttaaagccagtaaagaaggagatgccaaagtagaaggactgcttagatatcat
ccattcctgtatgataaagaaacctatccagaggatccatatgcaagtacaccagctaca
gaaaatgacgaagactgttttgttacacacgctgagggccgagggaagaggcccatcttt
gaatgcttttggaatggacgattaattccttattcttctgttaatgagtttgagtggtgt
acaagacccaagaaagttggttcaataccattagaatgttacaatcggatctcaggtgtt
ctcttcactaatgaccgttttcaagtcagcactaacaaactcacatttatggatttggaa
ttgcagctacgtgacaaggacactatctttacaagagttctcaatggtcaggagcaaaga
gtaaagatcaaccgagagttcacaaattggttgaaagaatgccatgaaaaatatgataaa
caggtgaagtttctgggtttccaaggcgagatagttcgaacagatgtgcaacctaaacgt
atgcagtcaccatgggctcggtacaaagccatcgtgtgggatggtaaaacctacaaatct
ggacagcaggtgaagataatgaaacctcaaccttatgtttatggcaccatagatcagttt
ttgctctatggtgaccacgatggtgatgtgtatgccaccggaggacatgtccaaattaca
ctggaacctaaggagattttcaatgaggttaagaccttcccaatccctaagattgacaga
caggctacagatgctgacatcaagggatacattgaaaatgaactgagcaagcttcctgat
aagttgagggtcacatggccggaggggaacccatggcctgagaaaatcattcaaccagct
ggaactcccatgggtccaatccaagtggagattctgaataaaaaaggggagagaatgtca
cggctacctgtatccactgttaattccaagaaattacagattgatctcaaggtgttgtgg
cactcttctactggaaaaatccaaaccaactctcacactggtgtacattccaaatgggag
tactggttcaggaaaatggaaaatttaaataagctgggcaaatacacacttcatttgcaa
actatgctgagtgatagtgattccccaagtatgtgggctggaagacgactgcctcattat
acactcaacttcagtattaaagaaaacagtgcagcagctttcacggtggctgttgttcct
ccttttgttcaagtgggggtacccttcactttgcctctgcaattcactgatgaatttaat
catcccactcagcctccttctgacatcaaaccccagctagagtgcagttcactaaagctg
agctatgagcagacaattacaagtggatctacgttcaccataaaagacctgagcgccatg
ggtaaagtaaccaatcatcaggacaagatgtacactataaaggtaacaatcccaggcctc
aaaccagacacccagtctttccagatcagtgcccgtccaggccctccacatcaattggtg
gtaaagcctgaagatgaggtttgcattgagaatggcacaccagcaggattcagtgtagac
gttcaggatgagttcaataatatcacaacacattccaaactaattgtccactgccagtta
attggaggctctgatttgccagccgactctgttgactgcagtaatactggttctggtttg
ctgctagcaaaaccagtaaaactgaagaacgtcactacagagcgtaccctcacagcaaag
tttagcgttcctaatcaaaaagctgtggcgtgtgtggagaggacagttcgtatttcccca
agcactcgcgtctaccgtatagaggtctacaggcaggaggatgattcagatgatgtcatc
atacttcaaaataaggagcgtattaactggacggcaggtgacacactcgggtgcctgcat
tttaagctctttgatgagggtggcaggcaggtggctttaacacagaaacttgcccataac
ataaaggtgaactgggctgcagatgttaaagctgcagaattgacgaaaggaagactacct
agtatatgtgtacccacaaaagtacacggagaacagttttatcaagtgtcttttcaggac
cagcagacggttgacacatccttcactatattcccacggccggatgagcctgaacggtta
agggttactctcagtgaaacaactgtcaggatgggagaaactctgtctgaaaatatttat
attgaggtggttgatcagtatggcaataagacagatgctctaaatgctgggagcatgaag
gaagtcggtgtgtctgcagataagcttgacgaatcagccttgaattttacctggcaggat
aaaatagggacaatggtggtgactggcattcgcttttcagaaggtctccctggtccaaga
gagttgtgttttaagtaccagaattttaaagagtttgtcagaataacagtcacttctgga
ccaccaacgaaactcgttctgctggagccaccagaactgccattacgtgtgttcaatgga
caaggtttggacacaccatttcagctgcaattatgtgacgcatggggaaatcctgctgca
gatcagcgggtcgtcatatcagtgaaatctcggtcatcacaactcaaggttaaatgctca
gtgatgtcccagactgtcgatacagaaggaaaggccagctttatgctggagaccatatca
gcaaaaataggagagcatgaactggagttcaaaggatccatcagtaaaaccaatactatt
catggcccggttataaagctgtgtgtggtgcctgatcccaacaaccctgttaagcttaat
gtagaatacaacaatgacggcatcttgagagcaggagatattttccctgtatttaaagta
actgtactctctgaagagggtggacctgtgaagaatgtgagtccctgcagtctgtccatg
ctgctgtgggaaggcttggcctcaggatgccgtcctccacttggggtaatggcacttaag
tgtagtaaacccaaggacaaggacaatgatgaccacttttacttcagagataaagagatt
cctctcagagcgggaaaatacatggtgcagtttctgtttgctgtaggttcaggcaaatcc
ctctggagcagtcagattgccctgaatgtcgttgccaataagccagtcaaactcgtccca
gacactcccgctgcgactcctgtggtctccaacagcagcactctagccgatcgtactctt
cttgatttcctatgcttgcatattatggatgagcacaataatccagctggtctggggctt
aatggaaaagtgatcctgactgtgacaactcctgatggtgatgatgcagaagagcttcct
atgtttgagagcaaagccaagagtctaacatacgatcttattaacgggaagacgattatc
aaggacttggcactgatggagaatagtccaggggctgatggagctgagtacacactccag
ttccacccagtgcttcaaggccctaaatctttgctcaacatccctccctttaaattgccc
ttcagattttacaatgatgcagagaaccagaaggtcatggctactatgagtaagaagaag
gaccaactgtctcagtccattgtagtctacaaagagattttggagactaacagacagctc
acaacagaactcacgggccaaatgcaagatgcagttaataaagagtctcagctgaaagat
gagctgaataaaaatggcgtagatgtttcaagaataactgatgtggcgtcagtcgaaggc
ttggttgctaaggtgactgcagatttggagaggataaagaatcagcctcggcgaaaatgt
accatacctgatccgtttagaggcagccaagatgtcctaggaaaggtagcacacctggca
ctggtgaaggatgatgatgcagctaaagtcatttcctggcatcttcttggtgacatggac
tgtgtggttactgtgacaacagcagcagcgaaaaaaatctacgatgaaacacagggacgg
caacaagtcatgccgatagaaactattttctggaaaccaaataacagaccgctgccccac
atcaggaacggtcaaagcttgttccgtccgttaggaagccctgtgtttgtcagagatctg
ctcatttttcctgagcatgctgaaaactgcagcaaggtcttctccaatcttcttggagac
accatattagtggacgacttggactccgctaaccattaccgcaagggggttgtccagagt
aagatgcaatgccctactctgttgacacggcaaggagaacgtatccgtagcaatgggaag
tttggtggtttacaaaataaggctcctccaatagagaagctgagaggacacgtgtttgga
gcaccactgcctccagaatatcacaccacatgtaaacaaaaggagctcctccagcagtac
tccatagcagcacagaaggcattaaaagtcaaggctgattatgactaccacatggagtat
ctgcagagtcctaagatgaaacagacgaagcaagagctccaacagcaagagaaggagttc
agagagatcgagaaaaaactttgcagcactccagtgcggacttctcccggttcactaaaa
cgcaaccttcaagacgagcttgatgagtcccttccagcaaaaaggattagacgtaaaacc
cgaaaactactggattcttaa
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