Clarias gariepinus (North African catfish): 128529153
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Entry
128529153 CDS
T10780
Symbol
pcdh15a
Name
(RefSeq) protocadherin-15a
KO
K16500
protocadherin-15
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
128529153 (pcdh15a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cgar03037
]
128529153 (pcdh15a)
04515 Cell adhesion molecules [BR:
cgar04515
]
128529153 (pcdh15a)
Cilium and associated proteins [BR:
cgar03037
]
Primary cilia and associated proteins
USH complex and associated proteins
128529153 (pcdh15a)
Cell adhesion molecules [BR:
cgar04515
]
Cadherins
Protocadherins
128529153 (pcdh15a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
PCDH15_12th
ECD
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_Cad99C_N
Cadherin_2
CDH23_a-b
DUF3951
Motif
Other DBs
NCBI-GeneID:
128529153
NCBI-ProteinID:
XP_053358484
LinkDB
All DBs
Position
8:complement(18921853..19154631)
Genome browser
AA seq
1733 aa
AA seq
DB search
MMRRAFWLVRCFGIGIVLLMLLTYIRAQGTEDWHYDECKLYRAGPPATIVTIDEESPNGT
VLVENMQINGRAQDPGRTISLNLLGNYDYWVILDPILQRLYLNSTGRVLDRDPPGYITTI
VVQVQCTNQLVGTVILHEVRIVVRDRNDNMPQFQQPRYYVAVNELTPVGTTIFTGFSGNN
GAIDIDDGPNGQIEYGIQYNPNDPMSNRTVQVASTLSGNIVLAERLNYEERTRYLIIVQA
NDRAPYPASRHTATTTLTLDVLDGDDLGPMFLPCVLVNNTRDCSPVTYRVSIPELIEPSK
LNPLNMSPPIRAVDQDRNIQPPSDRPGILYFILVGQPAVYPEFFSLNKTTAELRLLKPVR
RDLYQSFSLVIKAEQDNGHPLPAFADLRIEVLDENNQAPYFQQPSYQGFISESAPVGGTV
SGRANLTAPLAIIALDNDIEESKDPQVRITLSDYNTVFSITPTGITRYLLLIRPVDREIQ
TNYTFMMVASDGVQQSMPVTINIMVIDANDNTPTFSQVSYNIEVFTNMQAGETVIQLTAQ
DADEGLNGLVTYTILAGDQGHFVISNRTGRITIAPGVTLSVGRSYALTVRASDNAPEAER
RSSITTVYIEVLPPNNQSPPRFPLTTYNLEISEAMRIGAILLNLQAIDRELDPITYRILS
GDPQQMFNLSQTIGLLMLAKALDRETTDQYWLIVTASDGQPGGISTATVSIVVTDVNDND
PSFDLILPRNLSVLEERANLSVGQVRATDPDAGPNGQVRYRLLTHASLFSINANGSIFTA
VPLDRETQSQYDLVVEASDGAVDPRRTILTLLVQVLDINDNSPVFSRPIYTVNVPENTPA
GTVILRLNATDADLISNITYRIRTDAARQLFAVDRITGVLSVLQSLDFEALGRDGANYTF
QVEALDYEGVLPPGMATVTVRITDVNDYTPVFARPLYKGMVAPNAEKGTLITTVLATDQD
PSGTPASTVRYKVDQEQSPYSGSIFDVEETTGRVVTKVNLNEVPSTTFRLIVIAFDEGDP
VKMNTTLVEITVLQPSRIPIFTEEEYLFSPVSESAAIGQAVGMVLAAAANTTVFYSIVGG
NEGGEFRVDNRTGMIYTAKLLDYETRTSYELRLQADSLALVLANLRVPSKTNTAKVFINV
QDENDHPPVFTESLYIGGVTEDTKTFTSVLKVIATDIDTGNYSKMAYRLIIPPTPEGQDS
FVIEQYTGIIKSAIMYRNMRRSYFKFEVIATDDYGKGLSSSAEVVVSVVNALDMQVVVSN
VPPTVVEENKEQLVRILERYVQDQIPGAKVIVESIGPRRHGEGYSLEDYSKSDLQVYAID
PLTNRAISRQELFKFLDGKILDINKEFQPYLGEGGRILEIRSPDIVAAVKKAAQAVGYTE
GALLALAIIILLCCIPAILIIMITYKQFKEKQAECAKTARIQRSLAASKSSAAPAPVSTP
ASAPSNLYEELGDGKMRGYGREQQQLLRPSLLRPEALSMESGIDPGQDYYAQDYYSYDQG
YDPYPPYGSRTRLISPMYDEYGEAIMDEDAYYYSAYGPEAIRKNQIKLIVEKEGESTTTG
EDSGPDIQRNRLPNVTCQSNVNGSVYLAQNGTIIRTRRPPYPNNIKHFSPGRLGKHFKKL
DKLEVTQEEHLPLNSTVDNGPIGTTGTLSSMTNNNLDTRPLTWSIGSNIGPKSNVIKAHL
DHEQGHCQQEQESRVDNEEVKETFESPSDHTLSDEEELWMGPWNNLHIPMTKL
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggagggccttttggctggtaaggtgctttgggattgggattgtcctccttatg
ctccttacttacatcagggctcaaggaacagaagactggcattatgatgagtgtaagttg
tatcgagctggaccgcctgccaccatcgtcactattgatgaagagagtccaaatggcacg
gttctggtggagaacatgcagattaacggtcgagcacaggacccaggccggacaatatct
cttaatttactgggaaactatgactactgggttatactagaccctatcctccagaggctt
tacctcaacagcacaggaagagtactggatcgagatccccctggatacattaccactata
gtggttcaagttcagtgcactaatcagctggtgggcactgtaatcctgcatgaggtacgc
atcgtggtgcgcgacaggaacgacaacatgccgcagttccagcagcctcgctattatgtt
gcagtcaacgagctcactccagttggcaccaccatcttcaccggtttctctggaaataat
ggagccattgacattgatgacggaccaaatggccaaattgaatacggcatccagtacaac
cccaatgacccgatgtcaaacaggactgtccaggtggctagcaccctatctggtaacatt
gtccttgcggaaagactgaactatgaagaaaggacgcgttacctgatcatagtccaggcc
aatgatcgtgctccatatccagccagcaggcacactgctactacaacgctgacactggat
gtattagacggagatgacctgggtcccatgttcctgccctgtgttctggtcaataacaca
cgagactgcagccctgtcacataccgtgtctccatccctgaactcatagagccgagcaaa
ctgaatcccctaaacatgtcaccacccatccgagcggtggaccaggacaggaacattcag
cctccatcagacagacctggcattctctactttattctggttggccagccagctgtctac
ccagagttcttttctttaaacaagaccacagcagagctccgccttctaaagccagttagg
agggatctgtatcaaagcttcagccttgtcatcaaggcggagcaggataacggtcaccca
ctgcctgcgtttgctgaccttcggatagaggtgctggatgaaaacaaccaggcaccgtac
ttccagcagccatcataccagggtttcatcagtgagtcggcccctgtgggtggcaccgtg
tcaggcagagccaacctcacagcaccgctggccatcattgcccttgacaatgacatagag
gagagtaaagacccacaggtgaggataactctgagcgactacaacaccgtcttctccatc
acgccgactgggatcacacgttaccttctgctgatcagacctgtggacagagagatacag
acgaattacaccttcatgatggtggcctctgatggcgtacagcagagcatgcctgtaacg
atcaacatcatggttattgatgctaacgacaacacgcccaccttctctcaggtctcctac
aacatagaggtgttcactaacatgcaggctggagagacagtaatacagttaactgcccag
gatgctgatgagggtctgaacggtctggtgacctacaccattttggcaggagatcagggg
cacttcgtcatcagtaaccgtacaggtcgaatcaccattgctccaggagtgactctgagt
gtcggacgctcatatgctttaacagtcagagcatctgataacgcacctgaggctgaaagg
aggagttccataacaacagtatatatcgaggttctgcctcctaataaccagagtcctcca
cgctttccactgacaacctacaacctggagatcagtgaggccatgaggataggagccatc
cttcttaatctgcaggcgatagaccgtgagctagatccaattacataccgtattctgagt
ggcgatccacagcagatgttcaacctttctcaaactataggcctactgatgttagcgaag
gcattggacagagagaccactgatcagtactggctcattgtgacggcctctgatggacaa
ccaggagggatttcgacagctactgtcagtattgtggtcacagacgtcaatgacaatgac
ccatcctttgacctcatattgcctaggaacttaagcgtcttggaggagagggccaatttg
tctgtgggtcaagtccgagccacagatccagatgctggaccaaatggacaggtgcgctat
cggctccttacccatgcatctctcttcagcattaacgctaacggcagcatattcacagct
gtgccactggaccgggaaactcagagtcagtatgatttggtggtcgaggcttcggacggt
gcggtagaccctcgccgcacaatcctcacactgctggtgcaagtgttagacatcaacgac
aacagccccgtcttttcacggccaatttacactgtcaatgtacctgagaacactccagcc
ggaaccgtcatcctacgccttaatgctacagatgcagacctgatctctaatataacgtac
cgaataaggacagacgcagcacggcagctctttgcagtggacaggatcaccggagttctc
tcagtgctgcagtctctggattttgaggctctaggtcgagatggtgctaactacaccttc
caggtggaggcactggattatgagggtgtattgcctcctggaatggctacagttacagtg
aggattacggatgtcaatgactatactccagtattcgctcggcccctttataaaggcatg
gtggctcctaatgctgagaagggaacactaatcactacagtcctcgcaactgatcaagac
ccatctgggacaccagccagcacggtgcggtacaaagtggaccaggagcagtctccctac
agcggcagcatctttgatgtagaggaaactacaggcagagttgtaactaaagtgaacctg
aatgaggtgccaagcaccacttttagactgatagtgatcgcttttgatgagggtgatcca
gtgaagatgaatacaactctagtggagatcaccgtcctgcagccctccagaatacctatc
tttacagaggaggagtacttgttcagcccggtgagtgagagcgctgcgatcggccaggct
gtaggaatggttcttgcagctgctgcaaacaccaccgtgttctactctatcgtgggaggc
aatgagggaggtgagtttagagtggataaccgcactggaatgatttacaccgctaagctg
ctcgactatgagacacgcaccagctatgagctccgcctgcaggctgactccctggccctc
gtcctggccaacctgcgtgtaccttccaaaacgaacacagccaaggtgtttatcaacgtg
caggatgagaacgatcatcctccagtgttcaccgagtccctgtacatcggtggagtaacc
gaagacactaagactttcacgtcagtcctgaaggttattgctacggacatagacacaggg
aactacagtaagatggcatacaggctgataatcccccccactccagagggtcaggacagc
tttgtcattgagcaatacaccggcatcattaaaagtgccatcatgtaccgcaacatgcgc
cgctcttacttcaaattcgaggtcattgccactgatgactatggaaaaggtttaagcagc
agcgcagaggtggtggtgtctgtggtgaatgctttggacatgcaggtagtggtgtccaat
gtgccgccgactgtagtggaagagaacaaagagcagcttgtcagaattctcgagcgctat
gtgcaggaccaaatacctggagcgaaagtgatagtggaatccattggaccgcgccggcat
ggggagggctattcattagaggactacagcaaatcagacctgcaggtgtatgccatcgac
cctctcacaaacagggccatatctcgacaagagctttttaagtttctggatggtaaaatt
ctagacattaataaagagttccagccatatttaggtgaaggcgggaggattttggaaatc
cgctcaccagacattgtggctgctgtgaagaaagctgctcaggctgttggttacactgag
ggggcgctacttgccctcgccatcatcatcctcctctgctgcatcccagccatcctcatc
atcatgatcacctacaaacaatttaaagagaaacaggcagagtgtgccaaaaccgcccgt
atccagaggtcgcttgctgcttcaaaatcgtccgctgctccagcacctgtttcaactcca
gcttcagctccgtccaatctctatgaggagcttggggacggcaaaatgcgtggatatggc
agagagcaacagcagctgctgaggccatctttgctcaggccggaggcactctctatggaa
tcgggtattgaccccgggcaagactactatgcacaagactattacagctatgaccaaggg
tatgatccgtatcctccttatggcagccgcacgcggttgatatctcccatgtatgatgag
tatggagaggccataatggatgaagatgcctactactacagtgcctatggcccagaggct
atcagaaagaaccagataaagttaattgtggagaaagagggagagtcaacgactacagga
gaggacagcggtccagatatccagcgtaaccgtctgcctaatgttacctgtcaaagcaat
gtcaatggttcagtgtacctggcacagaacggaacaatcattagaacccgacggccacct
tatcctaataacataaaacatttttcacctgggcgactagggaaacattttaagaaactg
gacaagttagaagtcacacaggaagaacatctacctttaaatagcacagtggataatgga
cctataggaaccactggcacactttcatctatgactaacaacaacctcgacaccaggccc
ttaacctggtctatagggtctaatatagggccaaagtccaacgttattaaagcacatttg
gaccacgagcaggggcactgtcagcaggaacaggagtccagagtggacaatgaggaggtc
aaagagacctttgagtctccaagtgatcacacactgtcagatgaggaggagttgtggatg
ggtccctggaacaacctacacataccaatgacaaaactctga
DBGET
integrated database retrieval system
