Clarias gariepinus (North African catfish): 128530316
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Entry
128530316 CDS
T10780
Symbol
dhx9
Name
(RefSeq) ATP-dependent RNA helicase A isoform X1
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128530316 (dhx9)
03012 Translation factors [BR:
cgar03012
]
128530316 (dhx9)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
128530316 (dhx9)
5.6.2.6 RNA 3'-5' helicase
128530316 (dhx9)
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128530316 (dhx9)
Translation factors [BR:
cgar03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128530316 (dhx9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
ResIII
Dicer_dimer
nSTAND3
AAA_19
ATPase
AAA_14
AAA_22
Motif
Other DBs
NCBI-GeneID:
128530316
NCBI-ProteinID:
XP_053360172
LinkDB
All DBs
Position
1:complement(44901116..44914752)
Genome browser
AA seq
1276 aa
AA seq
DB search
MGDIKNFLYAWCGKKKLTPNYDIRAAGNKNRQKFLCEVRVDGFNYIGMGNSTNKKDAQAN
AARDFVNYLVRAGQISASEVPALGAGVPDVPDGGGGGGEGGEFGNLPASGPLPPHLLVKQ
ERDAEPRSAPVPGVTGLGYSGLNNPQWDRGANIQDYYARKEEQDAKATLESEEVDLNAGL
HGNWTLDNAKARLNQFFQKEKIQTDYKYNQVGPDHNRSFIAEMTIFVKQLRRNIFAREHG
SNKKLAAQSCALSLVRQLYHLGVIEAFTGQTKKKEGETLEVYNVNVSDELKHQLRSIIQE
LGIHIPPVDPSAPVSLVQGKLAHFEPSQRQSTGGVVQWSPPQVNWNPWTSSNIDEGPLAF
CTPEQISSDLQSELRYQMEHDTNLQERLQERQQLPVKNFEEEIMRTINSNPVVIIRGATG
CGKTTQVPQYILDQYIQDGRASECNIVVTQPRRISAVSVAERVAYERGEDLGKSCGYSVR
FESVLPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLMVVLRDVIHAF
PDVRVVLMSATIDTTMFREYYFNCPIIEVFGRTFPVQQYFLEDCIQMTQFVPPPSDKKRK
DKDEEGGEEEVNCNLVCGPEYGPETKRAMAQMNEKETPFELIEALLKYIETLQVTGAVLV
FLPGWNLIYSMQKHLEMNPHFGSHRYRILPLHSQIPREEQRLVFEPVPEGVTKVILSTNI
AETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFH
LCSQARFEKLETHMTPEIFRTPLHEVALSIKLLRLGAIGHFLAKAIEPPPLDAVIEAEHT
LRELDALDTNDELTPLGRILARLPIEPRLGKMMIMGCILNVGDAMCTISAASCFSEPFIS
EGKRLGFVHRNFAGTRFSDHVALLSVFQAWDEVRMGGEEAESRFCDHKRLHMSTLRMTWE
AKVQLKEILINTGFPEECLLNQVFSNVGPDNNLDVVISLLTYGSYPNVCYHKEKRKILTT
EGRNALIHKSSVNCPFTSQDPNYPSPFFVFGEKIRTRAISAKGMTMVSALQLILFAAKKI
TSNGEVVVLDDWINLRIEHEVAGSIAGLRAAMEALVVEVTKDPEYIRSFDPTNERLLNVI
RLLSRPSSAGLNLMNSNPRFGDGPRPPKMSRMDGGDGGFRGRGGYRGGGGYNGGGGGGGG
YRGSGGYRGSGGGGGGGYRGSGGYRGGGGGGYGGGGGGYRGGRGFNRGGYGGGGGGGGGG
GYGRGRGFNRGGYGGF
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgggggacataaaaaattttctctacgcctggtgcggaaaaaagaaattaaccccaaac
tacgatattcgggcagcgggaaacaagaacaggcagaagtttttgtgtgaggtacgagtc
gatgggttcaattacatcggaatgggaaactccaccaataagaaggacgcccaggccaat
gcagcacgagactttgtaaattatttggtccgtgcggggcaaataagcgcttctgaagtg
cctgctttaggggcaggtgttccagatgtgcctgatggtggtggtggtggtggtgaaggt
ggtgagtttgggaatctgcctgccagtggtcctttgcctccacacttacttgtaaaacaa
gagagagatgctgaaccgagatctgctccagttcctggagtgaccggtctcggttactcg
ggcttgaataatcctcagtgggaccgaggagccaatatacaggactactacgctaggaaa
gaggaacaggatgccaaagctaccctggaatcggaggaagtagatttaaatgctggtctg
cacggaaactggactctggacaatgccaaggcccgtctgaaccagttctttcaaaaagag
aaaatccaaaccgactacaagtacaaccaagtggggccggaccacaacaggagcttcatt
gctgaaatgactatctttgtgaagcagctccgtagaaatatttttgctcgtgagcacggc
tctaataaaaagctggcagcccagtcgtgcgcgctctccctggttcgtcagctgtatcat
ctaggtgtcatcgaggcttttacaggacagaccaaaaagaaagaaggagagacgttggag
gtgtataacgtaaacgtcagcgacgagctcaagcatcagctgcgtagcatcatccaagag
cttggcattcacattcctccagttgatcctagtgctccagtgtctcttgttcagggaaag
ttggcccacttcgagccttcacagagacagagtacaggaggtgtggtgcagtggtctcct
cctcaggtcaactggaacccttggaccagcagcaatatcgatgagggacctctggctttt
tgcaccccagagcagatcagttcagacctgcaaagtgagctccgctaccaaatggagcat
gacaccaacctgcaggagaggctgcaagagcgacagcagctgccagtcaaaaacttcgag
gaggaaatcatgcgcacaatcaacagcaacccggtagtgatcattcgcggagccacaggc
tgcggaaagaccactcaggtaccgcagtacattctggaccagtacattcaggacggacga
gcctcagagtgcaacatcgtcgtcactcagcctcggcgaatcagcgctgtgtcagtggct
gagcgcgtggcatacgagagaggcgaggatctggggaagagctgcgggtacagcgtgcgc
ttcgagtccgtcctgccaaggccgcacgccagcatcatgttttgcaccgttggggttctc
ctgaggaagctggaagccggaattcgagggatcagccacgtgatcgtggacgaaatccat
gagcgtgacatcaatactgatttcctgatggtggtgttaagagacgtgatccacgccttc
cctgatgtccgcgtcgtcctcatgtccgccaccatcgatacgaccatgttcagagaatac
tacttcaactgtcccatcatagaggtctttggtcgcactttccctgtgcagcagtacttc
ctggaggactgcattcagatgacgcagtttgttccacctccgtcagataagaagaggaaa
gacaaagatgaggaaggtggtgaggaagaggtaaactgcaacttggtatgcggacccgaa
tatggcccggagaccaaacgtgctatggcccaaatgaacgaaaaggaaacgccattcgag
ttgatcgaggccctgttgaagtacatcgagacgttgcaagtgaccggagccgtcctagtc
ttcctgcctggctggaatctcatctattctatgcagaagcacttggagatgaacccacat
tttgggagccatcgttataggatcctgcctctccactcccagatccccagagaggagcag
aggctggtgttcgagcctgtacctgaaggagtgactaaggttattctgtcaactaacatt
gccgagaccagcattaccatcaacgacgtggtctacgtcatagactcctgcaagcagaag
gtgaaactatttaccgcccataacaacatgaccaactacgccaccgtgtgggcatccaag
accaacttggagcagagaaagggtcgagctgggcgtgtcaggccaggcttctgcttccac
ctgtgcagccaggcacgctttgagaaactggagacgcacatgactccggagatcttccgc
acaccactgcacgaggtggctctcagtattaagttgctcagactcggtgctatcgggcat
ttcctggccaaagcaatcgagccccctcctctggatgccgtcatcgaagctgaacacact
ctccgagagctagacgccctcgacactaacgatgagctgacaccgctgggacgcatcctg
gcccgactacccatcgagcctcgtctggggaagatgatgatcatgggctgcatcctaaac
gtaggagacgccatgtgcacgatttctgccgcttcgtgcttctccgagccgttcattagc
gagggcaaacgattagggttcgtccacaggaacttcgcaggcacacggttctctgatcat
gtggccctgctttctgtctttcaagcctgggatgaagtcaggatgggcggagaggaggca
gaatctaggttctgcgatcacaagcgtctgcacatgtccactttaaggatgacctgggag
gccaaagttcagcttaaggagatcctaattaacaccggttttcctgaagagtgcctgttg
aatcaggtcttcagcaacgtagggccagacaataatctggatgtggtgatctccttgctg
acgtatggctcctaccccaacgtctgttaccacaaagaaaagaggaagatcttgaccact
gaagggcgaaacgcactcatccacaagtcttctgttaactgcccattcaccagccaagac
ccgaattatccgtcaccgttcttcgtctttggggaaaagatccgaacccgagccatttcc
gccaaaggcatgaccatggtcagcgctctccagctcattttgttcgccgccaagaaaatc
acatctaacggagaggtggtcgtgcttgacgactggatcaacctgcgcattgagcatgag
gtagctggtagcattgctggactgagagctgcaatggaggctctcgttgtggaagtgacc
aaagacccagagtacatcagaagcttcgaccccaccaacgaacgccttttaaacgtcatt
cggctactctccagaccctcctccgcaggactcaacctcatgaacagcaatccacgtttt
ggtgacgggcctcggcctccgaagatgtcccggatggatggaggagatggagggttccgc
ggtcgcggaggatacagaggaggtggaggatacaatggtggtggtggaggaggtggaggc
tacagggggtctggaggatacagggggtctggaggcggaggtggaggtggatatcgggga
tcgggcgggtatcgaggaggaggtggaggtggatacggagggggtggaggtggttacaga
ggaggtcgtgggtttaacagaggtggatatggaggaggaggaggaggaggtggcggaggt
ggttatggacgaggtcgtgggttcaacagaggtggatatggaggattctag
DBGET
integrated database retrieval system
