KEGG   Clarias gariepinus (North African catfish): 128530503
Entry
128530503         CDS       T10780                                 
Name
(RefSeq) HLA class II histocompatibility antigen, DR beta 4 chain-like
  KO
K06752  MHC class II antigen
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar04145  Phagosome
cgar04514  Cell adhesion molecules
cgar04672  Intestinal immune network for IgA production
cgar05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    128530503
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    128530503
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    128530503
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    128530503
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cgar04147]
    128530503
Exosome [BR:cgar04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   128530503
  Exosomal proteins of epithelial cells
   128530503
  Exosomal proteins of breast milk
   128530503
SSDB
Motif
Pfam: C1-set MHC_II_beta C2-set_2 Ig_3 C2-set_3 Psg1 ig
Other DBs
NCBI-GeneID: 128530503
NCBI-ProteinID: XP_053360463
LinkDB
Position
9:complement(35098257..35100577)
AA seq 258 aa
MSKMKQLLLIFLPAVLPTTCGDMLALQFWCFWSSDDLRDMVYIDAYIMNKIKYAEFNSSV
GRYVGYTASGIKSAKIWNENTALMEGRRAEVETVCKRNARIYNSVLLSQTVEPQVKVRLV
KQSDGSHPARLICSAHGFYPPYVKVTWLRNGKNIEGDMTSTEEMADGDWYYQVHSHLEYK
PESGEEISCVVEHASFKKPMSYKWVPSTSEPDKSKIAIGASGLVLGLVLSAAGFIYYRKK
SSGQWINQEEHRKFKEHE
NT seq 777 nt   +upstreamnt  +downstreamnt
atgtccaagatgaaacaactacttcttattttcctgcctgcagttttaccaacaacatgt
ggagatatgctggcactgcagttttggtgcttctggagctcggatgacttaagggacatg
gtgtacatagacgcttacatcatgaacaagatcaagtacgccgagtttaacagcagtgtt
gggaggtatgtgggatacaccgcctcaggcatcaagagtgcaaagatctggaacgaaaac
acagcgttaatggagggaagaagagccgaagtggagactgtctgtaagaggaacgctcgg
atttacaacagcgtcctgctcagtcaaacagttgagccgcaggttaaagtgaggttggtg
aagcagtcagatggctctcacccggccaggctgatctgcagcgctcatggcttttaccct
ccatacgttaaagtgacctggctgaggaacggtaaaaacattgagggtgacatgacgtcc
acagaggagatggctgatggagactggtactatcaggtccactcacatctggagtataaa
cctgaatctggagaggagatctcctgtgtggtggaacacgccagcttcaaaaagcccatg
agctataagtgggttccctctacatctgaacctgataagagtaagatcgctatcggggct
tcaggtctggtgttgggtctcgtgctctcagctgctgggttcatctactacaggaagaaa
tcatcaggtcagtggattaaccaagaggaacacagaaaatttaaagaacatgaatga

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