Clarias gariepinus (North African catfish): 128530735
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Entry
128530735 CDS
T10780
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
128530735 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128530735 (kdm2ba)
04121 Ubiquitin system [BR:
cgar04121
]
128530735 (kdm2ba)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128530735 (kdm2ba)
Enzymes [BR:
cgar01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
128530735 (kdm2ba)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
128530735 (kdm2ba)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
128530735 (kdm2ba)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
128530735 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
128530735 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_4
PHD
Motif
Other DBs
NCBI-GeneID:
128530735
NCBI-ProteinID:
XP_053360788
LinkDB
All DBs
Position
9:complement(37177289..37187232)
Genome browser
AA seq
760 aa
AA seq
DB search
MAMSLSADDEDYDSDTAEQQRPANRPKPKMASTPTASTPTTSTSSSSAGGVVKLPSNRSS
SGARRRRTRCRKCEACVRSECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCV
VCGEAGKEDTLDDEEEKFNAMLMECSICNEIVHPNCLKVKDAAGVVNDELPNCWECPKCN
YAGKTGKACKQKRGPGFKYASNLPGSLLREQKSTRDGKDEGERRRAERDDATRMPCDDTP
TLLMPRDVPRPRPDMPNFLRKKKKLFDDDDEEEDTGAKKKLKKPWKPEDSLLPKMSSMKM
EEEEQSEAEDERDDENKQPPRGPTRKEFGTVRKQEDEEDEDDTHKFVKEEEEEEDEGSEL
QERVQRAQRAKRAQRRRTGRNEHPLANENLQPDDSENDEVDKKNFRNGENGERAHLRARE
MNGASWELRHFYPSQIVPLGLNRIPPPIRPPPPRSPPKCVQMERHVIRPPPICPPPDRLP
LADGRSHVLQRETWLAIFSHLSHRELCVCMRVCRTWNRWCCDKRLWIKINVSRCKSITPL
MLSGIIRRQPLTLDLSWTNISKKQLSWLINRLPGLRVLILSGCSWAAVSALCTSSCPLLR
SLDLQWVEGLRDTQIKDLLSPPTDNRPGQMDTRSKLRNVLDLRLSGLDITDVSLRLIIKS
MPLLKHLDLSYCNHVNDQSVNLLTAAGTTTRDSLTDINLSVCNRITDQSLSYFKRCASIC
RIDLRFCKQVSRQACERFIAEMSVSVSFCLKEEKLLQKLS
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggccatgtctctgagtgcagacgatgaggattacgactcggacacagccgaacagcaa
aggcccgccaaccggcccaaacccaagatggcgtccacgcccacggcgtccacgcccacc
acctctacgtcctcctcctcggcggggggcgtggtgaagctgccatccaaccggagctcg
tcgggggcacggcgcagacgcacacgctgcaggaagtgtgaggcgtgtgtaaggagtgag
tgtggagagtgtcacttctgtaaggacatgaagaagttcgggggaccgggacgcatgaag
cagtcctgtatcatgaggcagtgtatcgctcctgttctgcctcacacagcggtgtgtgtg
gtgtgtggagaagccggtaaagaggacacacttgacgatgaggaggagaagtttaacgcc
atgctaatggagtgctccatctgcaacgagatcgtccacccgaactgcctgaaggtgaag
gacgctgcgggcgtggtcaacgatgagctccctaactgctgggagtgtcccaaatgtaac
tacgcagggaagactgggaaagcctgcaagcaaaaacgaggcccaggatttaagtacgcg
tccaacctgccgggctcgctgctgcgggagcagaagtccacgcgggacggcaaggacgag
ggcgagcgcaggagggccgagagggacgacgccaccaggatgccctgtgacgacacgccc
acgctgctgatgcccagagacgtgccccgcccccgacccgacatgcccaacttcctcagg
aagaagaagaagctgtttgatgatgacgatgaggaagaggacaccggtgcgaagaagaag
ctgaagaagccgtggaagccggaggattcgttactgccgaagatgtcctcgatgaagatg
gaggaagaggagcagtcagaggcggaggacgagagggacgatgagaacaaacagccgcca
cgcggcccaaccaggaaggagttcgggactgtgaggaagcaggaggacgaggaggacgag
gacgacacgcacaagtttgtgaaggaggaggaggaggaggaggatgaaggcagcgagctg
caggagcgcgtgcagagagcgcagcgcgccaaacgagcccagcgcaggaggaccggacgc
aacgagcacccgctcgctaacgagaacctgcagcccgacgacagcgagaacgacgaggtc
gacaagaagaacttcaggaacggagagaacggagagagggcgcacctgcgggcgcgggag
atgaacggtgcatcatgggagttgcgtcacttttacccgtctcagatcgtacccctgggt
ctgaaccgtatccccccgcccatacgcccgccgcccccccgctcgccacccaaatgtgtc
cagatggagcgtcacgtgatccggcctccgcccatctgccctcctcccgacaggctgcct
ctggccgatgggcggagccacgtgctgcagcgtgaaacctggttggccattttcagtcac
ctgagtcaccgtgagctgtgtgtgtgtatgagggtgtgtcgcacctggaaccgctggtgc
tgtgataagcggttatggataaagatcaacgtgagccgctgtaagtccatcacccctctg
atgctgagcggaatcatccggagacagcccctcacactggacctcagctggaccaacatc
tccaagaagcaactgagctggctcatcaacaggctgcctggtctgcgtgtgttgatcctc
tccgggtgttcctgggcggccgtctccgctctctgtacctccagctgtcctctcctgcgc
tcgttggacctgcagtgggtggagggactgagagacacacagattaaagacctgctgtct
ccacctacagacaacaggccaggtcagatggacactcggagtaaactgcggaacgttctg
gatctacgtctctcagggttggacatcactgatgtgtctctccgtctcatcatcaaaagc
atgccgctgttaaaacatctggatctcagttactgtaaccacgtcaacgaccagagcgtt
aacctgctgaccgccgctgggacgaccacccgcgactctctcacagacatcaacctgtca
gtgtgtaacaggataacggatcagtccctgagttactttaagcgctgtgcgagtatctgt
cgtatcgacctgcgcttctgtaagcaggtgagcaggcaggcgtgcgagcgcttcatcgcc
gagatgtccgtcagcgtctccttctgcctgaaggaggagaaactgctgcagaagctcagc
taa
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