Clarias gariepinus (North African catfish): 128534177
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Entry
128534177 CDS
T10780
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5
KO
K09446
interferon regulatory factor 5
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
128534177 (irf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128534177 (irf5)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
128534177 (irf5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
128534177
NCBI-ProteinID:
XP_053364468
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All DBs
Position
12:complement(31091373..31120891)
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AA seq
476 aa
AA seq
DB search
MSTQPRRIRLKPWLLAQVNSGKYPGLSWLNKECRLFQIPWRHATRHLPTPEEENTIFKAW
ALETGKYQEGVDEPDPAKWKANLRCALNKSREFMLKYDGTKETPMQPFKIYEVCDLQGNG
EECEDDEELPNFAHLSINPCTIEPPSYPGFQPANPAFLLPSMPPAFPDHSHVASAVKQED
RRLGEALPNGCGLNTGVIAPSAVPHSADMPDTMVDSPMPEVRPEAESQMQPCISDLLSSP
HMLPLTDLDIKFLYRGRTMGSMTVSNPQGCRLYSGNLAPTPEQVELFGPITLHQVLFPGS
AEIQNEKQRFYTEHLLDVMDRGLILEIQGQDIYAVRLCQCKVFWSGPGVPEEGRPNPMER
ERKINVFSLNNFLQGLIMYQKGEVPTPPPFEIYFCFGEDWPDRKPKEKKLIIVQVVPVVA
RILTEMFSGELSWSTESIRLEISNPDLKDQTVEHFKELHKLLQNQHGHAPWPGTLH
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagtacccagccgaggaggatccgtctgaagccgtggctgctggctcaggtgaacagt
gggaaataccccggcctcagctggctcaataaggagtgtcggctgtttcagatcccctgg
agacacgccacgcgccacctgcccacccccgaggaggagaacaccatattcaaggcctgg
gcgctggagacagggaagtaccaggagggtgtggatgagcccgacccggccaagtggaag
gccaacctgcgatgcgcgctgaacaagagccgggagttcatgctgaagtacgacggcacc
aaagagactccgatgcagccgttcaagatttatgaggtttgcgacctgcaggggaacgga
gaggagtgtgaagacgatgaagagctaccaaactttgcacacctctccatcaatccttgt
accatcgagcctcccagctaccccggattccaacccgccaacccggcgttccttctgccc
agcatgccacctgcctttcctgaccacagccatgtagcttctgctgtgaaacaggaggat
cgcagactcggggaagctcttccaaatggatgtggtctgaacaccggggtcatagcacca
tctgctgtcccccactcggctgacatgccagacaccatggtggacagtcccatgccagag
gtgaggcctgaagcagagagccaaatgcagccatgcatctctgacctgctgagcagccct
catatgctccccctaacggacctcgacattaagttcctgtaccgcggtcgcaccatgggc
tccatgaccgtgagtaatccacagggctgtcggctttattctgggaatttggccccgaca
ccggagcaagtggagctgttcgggcccatcactctgcaccaggtgctgttccctggctct
gctgagatccagaatgagaagcagcgcttctacaccgaacatctgctggacgtgatggac
cgtggcctcatcctggagatccaaggccaggacatctacgccgtgcgcttgtgccagtgc
aaagtgttctggtccgggccgggcgtgccagaggagggccggccgaacccgatggagaga
gagcgcaagatcaacgtgttcagtctcaataacttcctgcagggtctcatcatgtaccag
aagggcgaggtgccgactcccccaccatttgaaatttacttttgctttggagaggattgg
cctgacagaaagcccaaagagaagaagctgataattgtccaggtcgtgcctgtagtggcg
aggatcctgaccgagatgttctccggcgagctctcgtggtccacagagagtatccgcctc
gagatctccaatcctgatctgaaagaccagacagtcgagcattttaaagagctccacaaa
ctcttacaaaaccagcacggccacgccccatggcccgggaccctccactaa
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