Clarias gariepinus (North African catfish): 128534349
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Entry
128534349 CDS
T10780
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04010
MAPK signaling pathway
cgar04020
Calcium signaling pathway
cgar04260
Cardiac muscle contraction
cgar04261
Adrenergic signaling in cardiomyocytes
cgar04270
Vascular smooth muscle contraction
cgar04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128534349 (cacna1c)
04020 Calcium signaling pathway
128534349 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
128534349 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
128534349 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
128534349 (cacna1c)
04270 Vascular smooth muscle contraction
128534349 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128534349 (cacna1c)
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
128534349 (cacna1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
128534349
NCBI-ProteinID:
XP_053364722
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All DBs
Position
12:32324121..32559956
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AA seq
2035 aa
AA seq
DB search
MQTPEENHQGSNYTSPALVMVSNVSEQEHSVSVSKGGMVGLAPEHIPTPNAALSWQAAID
AAREAKLIRSAAAARISTASSTQQQRQHYSKPKKQTSTVATRTPHSLLCLTLKNPIRRAC
INIVEWKPFEIIILMTIFANCVALAVYIPFPEDDSNATNSNLEQVEYLFLIIFTVEAFLK
VIAYGLLCHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKGDGGTSIGGKAAGFDVKALR
AFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHRA
CFFFRNGQRGPIAEEKPAPCAPINAHGRHCDPPNITQCMMGWEGPNYGITNFDNFAFAML
TVFQCITMEGWTEVLYWVNDAVGKSWPWLYFVTLIIIGSFFVLNLVLGVLSGEFSKEREK
AKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENDEGLDDAKPRNLSIPASESESVN
TDIPPSGDLEGEPCCTHLVNRISKSKFSRYSRRWNRLCRRKCRAAVKSNVFYWLVIFFVF
LNTLTIASEHHKQPQWLTDVQDIANKVLLALFTGEMLLKMYSLGLQAYFVSLFNRFDGFV
VCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLL
LLLFLFIIIFSLLGMQLFGGKFNFDETRRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIM
AYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEEEKERRK
LARMASPEKWQGNEKPPVEKKEEKIEMKSITSNEETPKTTKVNIDDNDENPYPVNDFPGE
DEDEEPDMPVGPRPRPLSDIHLKEKAVPMPEARAFFIFSHTNKFRVLCHRIVNHNIFTNL
ILFFILLSSISLAAEDPVKSDSFRNQILGYADHVFTGLFTIEIILKMTAYGAFLHKGSFC
RNYFNILDLVVVSVSLISSGIQSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVA
IRTIGNIVIVTTLLQFMFACIGVQLFKGKFYYCTDSSKQSEAECRGTYILYKDGNVGKPE
RDHRNWENSEFNFDDVLQGMMALFAVSTFEGWPGLLYKAIDSHAEDTGPIYNYRVVISVF
FIIYIIIIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPK
NAYQYKVWYVVNSTYFEYLMFTLILLNTICLAMQHHGQSPSFNKAMNILNMLFTGLFTVE
MILKLIAFKPRGYFSDPWNVFDFLIVIGSIIDVILSEINPADPSSSTPSSVVRPMGLQNT
EDNARISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVI
GMQMFGKIALKDNTQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLACSPNHPCERGSDE
APTSEDCGSHFSIIYFVSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRI
WAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNA
TLFALVRTALRIKTEGNLEQANEELRAIIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYA
TFLIQEYFRKFKKRKEQGLVAKVPPKTALSLQAGLRTLHEMGPEIRRAISGDLTAEEELE
KAMKETVCTASEDDLFRVKRSDGFFKNHMNYYHQSDDCPDFPPSFTSQRPLHISKSGSPG
EGNSPSREKLVDSTFTPSSYSSSGSNANINNANNTCITNCYPSISTVDGHTRPLLIPVLL
PCSSWSFPKKSSDSDECHFPVISRGEGAKDEMHDKMVTENGQHEKDLLSTKMLVLQNDEC
KQLAVMEETNGGGDRRPWKFPQQAVLCPTALSRRSSFHLECLRRQSRSETPHKTALPLNF
VQQQVLISQMLDCFSPDSSVIKVAGQKLAATHDMTTEVMENVTECILNASGPHSPNSNVL
PYTHCSNGVRTSQGQKRAWEIKVNEKDVGGLQGSEQSPMNNKLVVEEDMECVTSL
NT seq
6108 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacacctgaggagaaccaccaaggttctaactacaccagcccagcactggttatg
gtgtctaatgtgagtgagcaggagcacagcgtcagtgtgagtaaaggtggcatggtaggt
ctggcgccagaacacataccaacgcctaatgccgccctcagctggcaggcagcgatcgat
gcagcgcgtgaggccaagctgataaggagtgcagcagcggcacgcatctccacagcgagt
tctacacagcaacagcggcagcactacagcaagcccaagaaacagacgagcacagtggcc
acgcgcaccccgcactcactcctctgcctcaccctcaaaaaccccatccgacgagcctgc
atcaacatcgtggagtggaaacccttcgaaatcatcattttaatgactatttttgctaat
tgtgttgccttagctgtctacatccccttccccgaggatgactccaatgccactaactcc
aatctggaacaagtggaatatctcttccttatcatctttaccgtggaagcatttctaaag
gtcatcgcatatgggttgctatgtcaccccaatgcctatttaaggaatggctggaatctg
ttggatttcatcattgtagttgtagggttgttcagtgcaatattagaacaggctacaaaa
ggagatggaggaacatcaatcggaggaaaggcagcaggctttgatgtgaaggccctgcgc
gctttcagagtactgagacctctaagattagtgtccggtgttcctagtttacaagtagtg
ttgaactccataattaaggccatggttccgctgctgcacatcgccctgcttgtactcttt
gtgatcatcatctacgccatcatcggcctagagctctttatggggaagatgcatcgtgca
tgctttttcttcagaaatggacagagaggacctatagctgaggagaagcctgcaccatgc
gccccaattaatgcccatgggcggcactgcgacccgcccaacatcacccaatgcatgatg
ggatgggagggaccaaattatggcattacaaactttgataattttgcatttgccatgctg
acagtgtttcaatgcatcaccatggagggctggactgaggtgctctattgggtgaatgat
gctgtaggaaagtcctggccatggctttattttgttactctaatcatcattggctcattt
tttgttcttaacttggttctgggggtcctgagcggagagttctccaaagaacgtgaaaag
gcaaaggcgcgtggagatttccagaaattgcgagaaaagcaacagctagaagaggatcta
aagggttacctggattggatcactcaggctgaggacattgacccagagaatgatgaggga
ctcgatgatgccaaacccagaaacttgagcattcctgcaagtgagagtgagtctgtgaac
actgacatacctcccagtggggatttagagggggagccgtgctgtacccacctagtaaat
aggatctccaaatccaagttcagtcgatattctcgtcgctggaatcgtctgtgccggcgt
aaatgtcgggctgctgtaaagtcaaatgtattttattggctggtgatattttttgtgttc
ctgaatactttgaccattgcctcggagcatcataaacaacctcagtggctaactgatgta
caagatattgccaacaaggtcctcctagctctcttcactggagaaatgcttttaaagatg
tacagtttgggactgcaggcatattttgtctcacttttcaatcgctttgatggttttgtg
gtgtgtggcgggatactagagaccattctggtggagacaaagattatgtcccctctaggc
atctccgtgctgcgttgtgtgcgcctgctgcgcatcttcaaaatcaccaggtattggaac
tctctcagcaacctggttgcatctttgctgaactctgttcgctccatcgcctccctgctg
ctgctactcttccttttcatcattatttttagtttgcttggcatgcaactgtttggtggg
aagttcaacttcgatgaaactcgtcggagcacatttgacaactttccccagtcattactc
acagtcttccagattttgactggagaggattggaactcagtaatgtatgatgggattatg
gcctatggtggaccttcatttcctggcatgctcgtgtgcatctacttcattattctcttc
atttgtggaaactatatcctcctgaatgtattcttggccattgcagtagacaaccttgca
gatgcagaaagtttaacatcagctcaaaaagaggaagaagaagagaaggagaggcgaaaa
ctggccagaatggctagtccggaaaagtggcaaggcaatgagaaacctcctgttgagaaa
aaagaagaaaagattgaaatgaaatctataacctctaatgaagaaactcccaaaaccact
aaggtcaacattgatgacaatgatgagaatccatatccagtaaatgacttcccaggagaa
gatgaggacgaagagccagacatgccagtgggtccaaggccaaggcctctttcagatatc
cacctaaaggagaaagcagttcctatgcctgaagccagagccttcttcatcttcagtcat
acaaacaagtttcgagttttgtgtcataggattgtcaaccacaacatcttcaccaatctt
attctgttcttcattctgctgagtagtatctctctggctgcagaggacccagtaaaaagt
gactcattcaggaatcagattctaggttatgcagatcatgttttcacgggtctcttcacc
atagagattatattaaagatgacggcatatggagcatttctccataaggggtctttctgt
cgtaactacttcaacattctggatctggtggtggtcagtgtctctctcatctcttctggg
attcaatcgagtgcaattaatgttgtgaagattctgagagttcttagagtcctcagaccc
ctgagagccattaacagagccaagggcctcaaacatgtagtccagtgtgtatttgtagca
atccgcactattggaaacattgttattgtcaccactctgctgcagtttatgtttgcttgc
attggagttcaactatttaagggcaagttctactattgcacagactcttctaaacagtct
gaggcagaatgcagggggacttatattctgtataaagatggtaatgttgggaagccagaa
agagatcatcgtaattgggagaacagtgaattcaactttgatgatgttcttcagggcatg
atggccttatttgctgtgtccacatttgaaggatggcctggcctcctgtacaaagccata
gactcccatgccgaagatactgggcccatctacaactaccgtgtggtcatctctgtcttc
tttatcatctatatcatcatcatcgccttcttcatgatgaacatctttgtcggttttgtc
attgttacattccaggagcaaggagaacaggagtacaagaactgtgagctggacaagaac
cagcggcagtgtgtggagtatgctctaaaggcacggcctctacgcaggtacattccaaag
aatgcataccagtataaggtgtggtatgtggtcaactctacatattttgaatatctgatg
ttcactctaatcctacttaacaccatctgcttggcaatgcagcaccatggtcagtcacca
tccttcaacaaggccatgaacatcctcaacatgctcttcacgggtctatttactgtcgag
atgatcctcaaacttattgccttcaaaccaaggggttattttagtgatccttggaatgtt
tttgacttcctcatcgtaattggcagcattatagacgtcattctgagtgaaataaatcca
gctgacccttcttcctctactccttcctctgtggtaagaccaatggggctccagaataca
gaagataatgccaggatttccattaccttcttccgactctttcgagttatgagactggtg
aagctactttcacgtggagagggaattcgtaccttgctgtggacttttatcaaatctttc
caagcacttccttatgtagcactgctgatagtaatgcttttcttcatctacgctgttatt
ggaatgcagatgtttggtaagatagccttgaaagacaacacccaaattaaccgaaacaac
aattttcagacatttccgcaggcagtgctgttacttttcagatgtgcaacaggtgaggct
tggcaggagataatgctggcctgctctcctaaccatccatgtgaaaggggttctgatgag
gcccccaccagtgaggactgtggcagtcatttttccatcatttactttgtcagtttctac
atgctctgtgcctttctgattattaacctgtttgtggctgttataatggacaactttgac
tacctaacacgggactggtccatactaggaccacatcatcttgatgagttcaagaggata
tgggcagagtatgaccctgaggcaaagggaaggattaagcatctggatgtggtgacattg
cttagaaggattcagccacccctggggttcggcaaactctgtccccacagagtggcctgc
aagcggctggtatctatgaacatgcccctgaacagtgatggcacagtaatgtttaacgct
accttgtttgctcttgtacgcacggcactccggattaaaactgaaggtaatctggagcaa
gcaaatgaagaactgagggcaatcattaaaaaaatctggaagagaaccagtatgaagttg
ctggaccaagttgtgccaccagcaggagatgatgaggtgacagttgggaagttctatgcc
acattcctaattcaggaatacttcaggaagtttaaaaagcggaaagagcagggtttagtg
gcaaaagtgccccccaaaacagctctttctcttcaggctggcctgcgtacactgcatgaa
atgggcccagaaatacgaagggcaatttcaggagacctcactgcagaggaggagttggag
aaggccatgaaagaaacagtgtgtactgcatctgaagatgatctgttcagggtgaagcga
tcagatggtttctttaaaaaccacatgaattattatcatcagagtgatgactgccctgat
tttccaccatcctttaccagtcagcgaccactgcacatcagcaagtcaggcagccctggt
gagggcaactcaccatctcgtgagaaactggtggactccaccttcacaccaagcagctac
tcctcctcaggttccaatgccaacatcaacaatgctaacaacacatgcatcaccaattgc
tacccatccataagcacagtggatgggcacactagacccctgctcatacctgtactactt
ccctgttcatcatggtccttccccaaaaaaagctcagactcggatgaatgtcatttccca
gtaatttctcgaggagaaggagctaaagatgaaatgcatgacaagatggttacagagaat
ggccaacatgaaaaggacttgctctccactaaaatgttggtgttgcagaatgacgagtgt
aagcagttagccgtgatggaagagacgaatgggggtggggacagaagaccatggaagttt
ccccaacaagctgttctctgcccaactgcactaagtcgacgatcttcctttcatctagag
tgtctaaggagacagagcagaagtgaaactccacataaaacagctttgcccctaaacttt
gtccagcaacaggtgttgatatcacaaatgttggactgcttctcaccagactcctcagtc
atcaaagtggccgggcagaagctggctgctacacatgacatgaccacggaggtgatggaa
aatgtgacagaatgcatactcaatgccagtgggcctcacagcccaaatagcaacgtcctg
ccatatacgcactgcagcaatggagtgagaaccagccagggacaaaaaagagcctgggaa
ataaaggttaatgagaaggacgtgggaggactgcagggttctgagcagagtccaatgaac
aataagctagtagttgaggaggacatggagtgtgtgacaagcttgtag
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