KEGG   Clarias gariepinus (North African catfish): 128536281
Entry
128536281         CDS       T10780                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128536281 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cgar03041]
    128536281 (smndc1)
Spliceosome [BR:cgar03041]
 Complex A
  U2 snRNP components
   U2 related factors
    128536281 (smndc1)
 Complex B
    128536281 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    128536281 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2730 DUF2067 LMBR1
Other DBs
NCBI-GeneID: 128536281
NCBI-ProteinID: XP_053366455
LinkDB
Position
13:31853830..31859473
AA seq 237 aa
MSDELVKQLSSYKAQLQQVEAALSTDPDNEDLLKLQKDLQEVIELTKDLLTSQPAEGVAS
PNSSDAVPPKHSWKVGDRCMAVWNSDGQQYEAEIEEIDSENGTAAITFTGYGNAEVVPLQ
ALKAAEQAKSSMEEDAKPKSKKKLQAEQREYKKKKAQKKVQRMKELEQEREDQKSKWQQF
NNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNVRHLMPQ
NT seq 714 nt   +upstreamnt  +downstreamnt
atgtctgacgaattggtgaaacaactgagcagttacaaggctcagctccagcaggtggag
gctgcgctctctacagacccagacaatgaagatctgctcaagttacagaaagacctgcag
gaggtcattgagttgacgaaagacctgttgacgtctcagccagcagagggcgtcgctagt
cccaacagttcagatgctgtgcctccaaaacacagctggaaagtaggggatcgttgcatg
gctgtgtggaacagcgacggacagcagtacgaagccgagatagaagagatcgacagcgag
aacggcacggccgccatcaccttcaccggctatggcaatgctgaggtggtgcctctgcag
gcgctcaaagcagccgaacaggccaagagcagcatggaggaggatgccaaacccaagtcc
aagaagaagctgcaggcagagcagagggaatacaagaagaaaaaggcacagaagaaagtg
cagaggatgaaagagctggaacaagaaagagaggaccagaaatccaaatggcagcagttc
aataataaagcgtattcaaagaacaagaagggacaagtaaaacgtagtatatttgcctct
ccggagagcgtgaacggaaaagtcggtgtgggtacgtgtgggatcgcagacaaacccatg
actcagtataacgacacatccaaatacaacgtcaggcatctgatgccccagtga

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