Clarias gariepinus (North African catfish): 128540952
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Entry
128540952 CDS
T10780
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128540952 (scn4aa)
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128540952 (scn4aa)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
128540952
NCBI-ProteinID:
XP_053366944
LinkDB
All DBs
Position
14:7656320..7682338
Genome browser
AA seq
1838 aa
AA seq
DB search
MAKMVPTTGPEVFRRFTPESLAEIERLIEERKIRMELEDEELETEPTAPKSDLEAGKTLP
MIYGDPPEELFNIPLEDIDPFYKTQKTFIIITKGNTIYRFNAEPSCYVISPFNLIRRAAI
RILIHSLFSMIIMITILSNCVFMTMSNPPAWSKIVEYVFTGIYTFEATTKVVSRGFCIGS
FTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQ
SVKKMVDVMILTNFALAVFALIGLQLFMGNLRQKCIRWPIPNSTMDDYNSTLTYNSTLTY
NTTFLNDTFDFKAYIENEENQYFLEGSLDALLCGNSSDAGKCPEGYTCMKAGRNPNYGYT
SYDNFGWAFLALFRLMTQDYWENLFQLTLRAAGKTYMLFFVVVIFLGSFYLINLILAVVA
MAYDEQNQATIAEAREKEEEFQRMLEQLNNQEQQLQSSSKASLASQTTLSRESEMADDGD
DVIKDRNGRIIPRLVIHRAPTMKESASDDEQKVDKKSICSKHSMMHLEHPGISQRTASAL
SVLSVTREELAEAQRPCPPGWYKFADIFLKWDCCKPWIVFKKWVHFVVMDPFVDLGITIC
IVLNTLFMAMEHYPMSPEFEHVLSVGNLVFTGIFTAEMVFKLIALDPYYYFQVGWNIFDS
IIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVL
AIIVFIFAVVGMQLFGKSYKDCVCKIAEDCELPRWHMNDFFHSFLIVFRILCGEWIETMW
DCMEVAGGAMCLVVFLMVMVIGNLVVLNLFLALLLSSFSGDNLSAGDEDGEMNNLQIAIG
RITRAIDWIKAFIISTVQQILGRKPPEAETGETGKKESFTLNHLDKDQMADGLANCLETL
TLNVPIAKAESDVDDEESEDLSEEEDANKKKGQGVLNDGDSSVCSTVDYRPPEPPPEEEE
EVEPEPEDPEACFTENCVRRCPCLNVDITQGKGKNWWNLRRTCYTIVEHDYFETFIIFMI
LLSSGALAFEDIYIERRRTIKIILEYADKVFTYIFVVEMLLKWVAYGFKTYFTNAWCWLD
FLIVDVSLISLTANLLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIM
NVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTEELFPIDQVNNMSDCIALMHTNESRWV
NVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREIEDQPSYEINLYMYLYFVIFIIF
GSFFTLNLFIGVIIDNFNQQKQKICGEDLFMTEEQKKYYNAMKKLGSKKPVKPIPRPTNI
IQGVVFDFISQQFFDIFIMVLICLNMVTMMIETDDQSEEKENVLYQINLVFIVVFTGECI
LKMVALRQYFFTVGWNVFDFIVVILSIAGLMLSDIIEKYFVSPTLFRVIRLARIGRVLRL
IKGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKQAGVDDIFNFET
FGNSILCLFEITTSAGWDGLLLPMLNSGPPDCDPDFENPGTDVMGNCGNPGMGIMFFCSY
IIMSFLVVVNMYIAIILENFNVAQEESSDLLCEDDFEMFDETWERFDTEATQFLPYEQVF
DFVDALQEPLRIHKPNRIKLVNMDLPVVIGDKIHCLDIMLAVTQNVLGDTTEMAAMRESM
EAKFKMNNPSPESFEPIITTLRRKEEERAAIVIQNSFRKHLLKRSIRHASFMHRSKKRKV
RRQGDEEPPEKEGLLARKMTALYGSNAELAMALELKSRPMPVKSTSSGLPMPAPFRRTQG
HQRIVPVEVTNDVVLRSAPTSMPNSSSSDMAAGNESVI
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaatggtacctaccacaggccctgaagtgttccgccgcttcactccggaatca
ctggcagagatcgagaggctcatcgaggaaagaaaaatccgaatggaattagaggatgag
gagctggaaacagagccaacagcacctaaaagtgacctggaagcagggaagactctgccc
atgatctatggggatccaccagaggagctgttcaacatacctctggaagatatagacccc
ttctacaaaacgcaaaaaacctttattatcatcaccaaaggcaacacaatctacaggttt
aatgcagaaccatcctgttacgttatcagcccatttaacctcataagaagagcagccatt
agaattctcatacattcattatttagcatgattatcatgataactattctctccaactgt
gtattcatgacaatgagcaaccctcctgcctggagtaaaattgtggagtatgtctttact
ggtatatatacctttgaggcaacaacgaaagtggtgtcacgaggcttctgtattggatct
tttacattccttcgtgatccatggaattggctggatttcatggtgatcagcatggcgtac
atcacagaatttgttgaccttggcaatgtgtcagcgcttaggacgttccgtgtgctcaga
gcccttaaaacaatcactgttattcctggcttgaaaactattgttggagctctgatccag
tctgtcaagaagatggtggatgtgatgattctgaccaactttgctctcgccgtgtttgcc
ttgattggcctgcagctattcatgggtaacctgcggcagaagtgtatacgctggcccatt
ccaaacagcaccatggatgactacaactccaccctgacctacaactccactctgacctac
aacaccaccttcctcaacgacacttttgacttcaaagcctacattgaaaatgaagaaaac
caatactttctggaaggaagcttagatgctttactatgtggaaacagttctgatgctggg
aagtgcccagaaggatatacatgtatgaaggctggaaggaacccgaattacggctacacc
agctatgacaatttcggctgggcttttcttgctctctttaggctcatgactcaggactac
tgggaaaatctctttcagctgactctccgtgcagctggaaaaacctacatgctttttttt
gtggtggtcatatttctgggatcattctacctcatcaacttaatcctggctgtagttgcc
atggcatatgatgaacagaaccaggccacaattgctgaggcccgagaaaaagaggaagaa
tttcaaagaatgctggagcagctcaataaccaagagcaacagttgcaaagtagtagtaag
gcatcgttggccagtcagacaactctgagcagagagtcagaaatggcagatgatggggat
gatgtaataaaggaccgtaatggaaggattattccccgtctggtcatccatagagccccg
actatgaaagagtcagcatcagatgatgagcaaaaagttgacaagaaatcaatatgctcc
aaacatagcatgatgcacctggaacatcctgggatctcacagaggacagccagtgcattg
agcgtgctgagtgtgactagggaagagttggcggaggcccagaggccttgtccgcctggc
tggtataagtttgctgacatctttttaaagtgggactgctgtaaaccatggatagtcttc
aagaaatgggtccattttgtggtgatggatccctttgtggacctaggcattacaatttgt
attgtgctcaatacactgttcatggctatggagcactatccaatgagtccagaatttgaa
catgtactatctgttggcaacttggtgtttactggtattttcacggcagaaatggtgttc
aagctcattgcattggatccctactactacttccaggtgggctggaatatatttgacagc
atcatcgtcactcttagcctggtggagttaggtctggccaacgtgcagggtctgtctgtc
ctcagatccttccgtttgctgcgagtctttaagctggctaaatcctggcccacgctcaac
atgctgatcaaaatcatcggtaactcagtgggcgctctagggaacctgactctggtgctg
gccatcattgtcttcatcttcgccgttgtaggcatgcagctctttggcaaaagctacaag
gactgcgtgtgtaagattgcagaggactgcgagctacctcgctggcacatgaacgatttt
ttccattcgttcctcattgtctttcgtatcctgtgtggcgaatggattgaaaccatgtgg
gattgcatggaagtggctggaggggccatgtgccttgtggttttcctcatggtcatggtc
ataggaaacctggtggtgctgaacctgttccttgctttgctgctcagctcattcagcggg
gacaatctctcagcaggtgatgaagatggtgagatgaacaatctccagattgccattggc
cgcatcaccagagccattgactggatcaaagcctttatcatcagcactgtacagcagata
ttgggcaggaagcctccagaggccgaaacaggggaaacaggaaaaaaggaaagttttaca
ttaaaccaccttgataaagaccagatggcagatgggttagccaactgtctggagacgctg
accctgaatgtgccgattgccaaagctgagtctgatgtcgatgatgaagagtcagaggat
ttatcagaagaagaggatgcaaacaaaaagaagggtcagggtgtcctcaatgatggagac
tcttcagtgtgtagcacagtggactataggcctccagaacccccacctgaggaagaggag
gaagttgaaccagagcctgaagatccagaagcttgttttactgaaaactgtgtaagacga
tgtccatgtctgaatgtggacatcactcaaggaaagggaaagaattggtggaatctgcgc
agaacttgctacaccatagtggaacatgattactttgaaaccttcatcatctttatgatc
cttctcagtagcggtgcgctggcttttgaggacatttacatcgagcgtcgcaggacaatt
aagattatcttggagtatgcagataaagtcttcacatatatatttgtagtagagatgtta
ctgaaatgggttgcatatggcttcaagacttactttaccaatgcctggtgctggctggat
tttttaatcgttgatgtgtcacttatcagtttgacagcaaatctgttgggctattcagaa
ctggggccaataaaatctctccgaactcttagggctcttcgacctttacgagctttgtcc
agatttgaaggaatgagggtggtagtgaacgcattgctgggcgccattccgtccatcatg
aatgtgctcctggtgtgtcttatattctggctcatcttcagcattatgggtgtcaacttg
tttgctggaaaattctaccgctgcattaataccacaacagaagaacttttccccatcgac
caagtgaacaacatgagtgactgcatagcgctaatgcacactaatgaatcgcgctgggtc
aatgtcaaggtcaactatgacaatgtggggttaggttacctttcgctgctacaagtggct
acatttaaaggctggatggacattatgtatgctgcagtagactccagagagattgaagac
cagccgtcatatgagattaacttatacatgtatctgtattttgtaatcttcatcatcttt
ggctccttcttcaccctcaacctcttcattggtgtcatcatagacaactttaatcagcaa
aaacaaaagatatgtggggaagatctctttatgacagaggagcagaaaaagtactacaat
gccatgaaaaagctgggttccaagaagcctgttaaacccatacctcgtcccacaaatata
atccagggtgtggtgtttgacttcatctctcagcaattttttgatatcttcatcatggtg
cttatttgcctcaacatggttaccatgatgattgagacagatgaccaaagtgaagagaaa
gaaaatgttctttaccagatcaacttggtctttatcgttgtcttcactggggagtgcatc
ctaaaaatggtggcgctgagacaatactttttcaccgtgggatggaatgtgtttgatttc
attgttgtcatcctttctatagctggacttatgctgtcagacataattgagaagtacttt
gtgtcccccaccctgttccgtgtcattcgcttggctagaattggacgtgtgcttcgtctt
attaaaggagcaaagggcatcaggacacttttatttgctctgatgatgtcacttcctgct
ctgttcaacatcggcctacttctcttccttatcatgtttatcttttccatctttggcatg
tctaacttcgcctatgtaaaaaagcaggctggcgtcgatgacatttttaactttgagacc
tttgggaatagcatcctgtgcctatttgagatcacaacttcagctggttgggatgggctc
ctactccccatgcttaacagtggtcctcctgactgtgaccctgattttgaaaatcctgga
acagatgtaatgggcaactgtggaaacccaggcatgggcataatgttcttctgcagttat
attatcatgtctttcttagtggtggtgaacatgtatatcgccatcatcttggagaatttt
aatgttgcccaggaggagagcagtgacctgctgtgtgaggatgactttgagatgtttgat
gagacttgggagaggtttgacacagaagccactcagtttttgccctatgaacaagtgttt
gattttgtagatgcactacaagaacccttgcgcattcacaaacctaacagaatcaaactt
gtcaatatggatctgccagttgtaataggggacaagattcactgtctagatatcatgttg
gccgtcacccaaaacgtgctaggagatactactgagatggcggccatgagggagagcatg
gaggcaaagttcaaaatgaataacccaagtcccgaatcctttgagcccatcatcaccact
ctgaggagaaaggaggaggagcgggccgccattgttattcaaaattcattccgcaaacat
ctcctcaaacgctctatccggcatgcctccttcatgcatcgctctaagaaaagaaaagta
aggcggcagggggatgaagagccaccagaaaaagagggtctgctagcacgcaagatgact
gccctatatggcagcaacgcagagcttgctatggctctggagcttaagtctaggcctatg
ccagtcaaatcaacttcatctggactcccaatgccggcaccttttcgtcggacccaaggc
catcagaggatagtgccagtcgaagttacaaatgacgtagttctccgttctgcacccaca
tctatgccgaactcttcaagttcagacatggcagcaggaaatgaatcagtcatatag
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integrated database retrieval system
