Clarias gariepinus (North African catfish): 128544765
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Entry
128544765 CDS
T10780
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128544765 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128544765 (eftud2)
Spliceosome [BR:
cgar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128544765 (eftud2)
Complex C
U5 SnRNP specific factors
128544765 (eftud2)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
128544765
NCBI-ProteinID:
XP_053371001
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All DBs
Position
16:9518641..9540070
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AA seq
971 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEDVEADDREAAEADEDEEDDDQVDGDEEGGGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKQFTLTEQELPATVYEMEFLAD
LMDSSELIRNITLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTER
LIKHAVQERLAITICINKIDRLILELKLPPTDAYYKLRHIVDEVNGMLSTYTTDESLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTFGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
NSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGLVDMCVQHIPSPQGGARAKIEHSYTGGLDSDLGEAMTECDPDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYTLEDEEDSQICTIGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagacagatctgtacgacgaattcggtaactacatcgggccagaactggactccgat
gaggatgaggacgtagaagcagatgacagagaggctgctgaggcagatgaggatgaggag
gatgatgaccaggttgatggtgatgaggagggtggcggcatggaggtagttttgcatgaa
gataagaagtattatccgacggctgaggaggtttatgggcccgaagtggagaccatcgtc
caggaggaggacacacaaccacttaccgaacccataataaagcctgtgaagaccaagcag
tttactcttacagagcaggagctgccagctacagtttatgaaatggagtttctcgctgat
ttaatggacagctccgagctgattagaaatatcactctgtgcggtcatttacaccatggc
aagacgtgctttgtggactgcctgattgaacagactcatccagaaatccgtaagagagat
gatgcagatcttagatacacagatattcttttcaccgaacaagagagaggagttggtatt
aagagcacccctgtgactatggtacttcctgactcgagagggaaatcatatctgttcaat
attatggacactccaggtcatgtaaacttctctgatgaggtgacggcagggatcaggctt
tcagatgggattgttctgttcattgacgctgcagagggggtgatgctgaacacggagcgt
ttgataaaacacgccgtgcaggagcggctggccataaccatatgcattaacaaaatagac
cggcttatccttgagcttaaacttcctcccactgatgcctactacaaactgcgccatatc
gtcgatgaggtcaacggcatgctcagcacatatacaactgacgagtctctagtggtgtct
ccgctgctgggcaacgtgtgtttcgcttcctcacagtacagcatctgctttaccctcggg
tctttcgccaagatctactctgatacctttggtgacataaactacaacgagtttgccaag
agactctggggagacatctacttcaatcccaagacgaggaagtttactaaaaaagccccc
aacagtaactctcagcgcagctttgtcgagttcgtcctggagccgctctacaagatcctc
tcgcaggtggtcggagatgtggacacttcactgccccgggtactggatgaactgggcatc
cacctgaccaaagaggagctcaaactcaacatccgtcctctactgcgactcgtctgcaac
cgcttcttcggagagttcacaggtttggtggacatgtgtgtgcagcacatcccgtctcct
caagggggcgccagagccaagatcgagcatagctacaccggcgggctggactccgacctg
ggggaggctatgactgagtgtgaccctgatggtccgttaatgtgccacaccactaagatg
tacagcacagatgacggagtgcagttccacgcctttggtcgggttctgagtggaacactg
caggcggggcagcccgtgaaagttctgggagagaattacacactggaggacgaagaggac
tcgcagatctgcaccatcggacgcctctggatctctgttgccaggtatcagattgaggtg
aatcgggtgccagctggcaattgggtgctaattgaaggctgtgaccagcccattgtgaaa
acagccaccatcacagagcctcgaggcaatgaagaggctcagatcttcaggccattgaag
tttaacactgcttctgtcatcaaaattgctgtggagcctgtaaatccctctgaactgccc
aagatgttggatggactgagaaaagttaacaagagctacccgtcccttacgacaaaggta
gaggagtctggagagcatgttatcctgggtacaggtgagctctacctcgactgtgtcatg
cacgacctgagaaagatgtactcggagatcgacatcaaggtagctgatcctgtagtgacg
ttttgcgagacagtggtggaaacatcctctctcaagtgctttgctgaaacaccaaataaa
aagaacaagatcacaatgattgctgaacctttggagaaaggccttgctgaagacatcgag
aacgaagttgtgcagattacttggaacagaaagaagttgggagaattcttccagaccaag
tatgactgggatttgctggcagcccgttctatctgggctttcggacccgacaccaccgga
cccaacatcttagtagatgacaccctgccctccgaggtggacaaagctctccttggctcg
gtgaaggatagcatcgttcagggtttccagtggggaactagagaaggtcctctatgtgat
gaacccattcgtaatgtgaagtttaagattctggatgcggtcatagctcaggagccgcta
cacagaggaggcggacaggtcattcctaccgcaagaagagtcgtttattccgccttcctc
atggctacacccaggctgatggagccctattactttgtcgaggttcaagctcctgctgat
tgtgtatctgctgtttacactgtactggcgcgcaggagaggtcatgtgactcaggatgca
ccaatccctggttcgcccttatacaccatcaaggctttcattcctgcaatcgactcgttt
gggtttgaaactgatctgcgaacgcatacacagggacaggccttcgcgcttagtgtgttc
catcattggcagatcgttcctggtgatcccctggacaagagcatcgttattcggccactg
gagccccagcctgcccctcatctagccagagaattcatgatcaaaactcgtcgacgtaag
ggtttgagcgaggacgtcagtatcagcaagttcttcgacgatcctatgttgttggaactg
gccaagcaggacgtggtgttgaactaccccatgtaa
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