Clostridium gasigenes: J1C67_03970
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Entry
J1C67_03970 CDS
T07299
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgas
Clostridium gasigenes
Pathway
cgas03030
DNA replication
cgas03410
Base excision repair
cgas03420
Nucleotide excision repair
cgas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J1C67_03970 (ligA)
03410 Base excision repair
J1C67_03970 (ligA)
03420 Nucleotide excision repair
J1C67_03970 (ligA)
03430 Mismatch repair
J1C67_03970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgas03032
]
J1C67_03970 (ligA)
03400 DNA repair and recombination proteins [BR:
cgas03400
]
J1C67_03970 (ligA)
Enzymes [BR:
cgas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J1C67_03970 (ligA)
DNA replication proteins [BR:
cgas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J1C67_03970 (ligA)
DNA repair and recombination proteins [BR:
cgas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J1C67_03970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J1C67_03970 (ligA)
MMR (mismatch excision repair)
DNA ligase
J1C67_03970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J1C67_03970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
RNA_ligase
HHH_3
BRCT_2
Nlig-Ia
DUF6134
DUF7083
Motif
Other DBs
NCBI-ProteinID:
QSW20338
LinkDB
All DBs
Position
CGAS001:complement(804966..806957)
Genome browser
AA seq
663 aa
AA seq
DB search
MDEKTKIELLVEELNKYAYEYYSLDNPTVTDKEYDEKYDELKALEKENEYVLPYSPTLRV
GDRILEGFNKYTHKARLWSLDKAQTIQEIEDWHNRNIKFVNEMNLRGEELPSLKYVLTKK
FDGLTVNLTYDENGILVTAATRGNGETGENVTAQVQTIKAIPLKIASGDLFEIHGEAIMT
TEAFENYNKSSESPLKNLRNGAAGALRNLNLKETAKRNLSAFFYDVGYKEGNAFKTYEEM
LGFIKQKGFPMDDYIKYCTTLEEVEKEINYINDIRFDLNYDIDGVVIAIDDIKTRELLGY
TVKFPKWAIAFKFEAQEATTTLLDVEWNVGRSGRVGPTAILEPVELAGVTVRRATLNNID
DIRRKGVRIGAEVHIRRSNDVIPEIMGVVKDSLEDTVEINVPKICPACGSHVVQDGVHYF
CENTLSCKPQMVKSIVHFASREAMNIVGFSEKTAEQLFEKLDIKSISNLYRLQTGDLLQL
EKFKEKKAKNILEAVEKSKECELYRFIYALGIPNVGVKTAKDLVNTFKSLEGLKNATFDE
LVAVPEVGDIVAKGVIEFLKEEKVVNTIDELLSLGVNPKYEEKKIISSPFEGKTVVVTGT
LKSYSRGEIKSKLEMLGAKVSGSVSKKTDYVVAGEEAGSKLIKANDLGVRVLTEEEFETI
VRG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggatgagaaaacgaagatagaacttctagtggaagaattaaataaatatgcatatgaa
tattattctttagataatcctacagtaacagataaagaatatgatgaaaaatatgatgaa
cttaaagctttagaaaaagaaaatgaatatgtacttccatactcaccaacattaagagtt
ggtgataggattttagaaggttttaataaatatactcataaagctaggctttggagtttg
gataaagcacaaacaatacaggaaatagaggattggcataataggaatattaaatttgtt
aatgaaatgaatttaagaggagaagaacttccatctttgaaatatgttttaactaaaaag
tttgatgggcttacggtgaatcttacatatgatgagaatggaattctagttacagcagca
actagagggaatggtgaaactggagaaaatgttacagcacaagtacaaaccataaaagca
ataccccttaaaatagcaagtggagatttatttgagattcatggtgaagctattatgaca
acagaagcctttgaaaattataataaatcatcggaatcacctcttaaaaatctaagaaat
ggtgcggcaggagctttaagaaatcttaatttaaaagaaactgcaaagagaaatctatca
gcatttttttatgatgtaggatacaaagaaggtaatgcatttaaaacttatgaagaaatg
ctaggatttattaaacaaaagggattccctatggatgactatataaaatattgcacaact
ttagaagaagtagaaaaagaaataaactatattaatgatataaggtttgatttgaattat
gatatagatggagtagttatagctatagatgacattaaaacaagagaacttttaggatac
acagttaagttccctaaatgggcaattgcctttaagtttgaagctcaagaagctacaact
acgcttttagacgtagagtggaatgtgggtagaagtggtagagttggaccaacagcaata
ctagaacctgttgagcttgcaggagtaacggtgaggcgtgcgactttgaataatattgat
gatattagaagaaagggagtaaggattggcgcagaagttcatatacgtagatctaacgat
gttattcctgaaataatgggagtagttaaagatagtttagaagatacagttgaaataaat
gtccctaaaatttgtcctgcttgtggaagtcatgttgttcaagatggagttcattatttt
tgcgaaaacacattatcttgtaagccgcaaatggttaaaagtatagtacatttcgcatca
agagaagctatgaatatagtagggttttcagaaaaaacagcagaacaactttttgaaaaa
cttgatataaaatctatttcaaatttatataggttgcaaacaggagatttattgcaatta
gaaaaatttaaagaaaaaaaggctaagaatattttagaggcagttgaaaaaagtaaagaa
tgtgagttgtatagatttatttatgcacttggtattccaaatgtaggtgttaaaacagct
aaagatttagttaatacatttaaatccctagagggattgaaaaatgctacatttgatgaa
ttagtagctgttccagaagttggagatatagttgcaaaaggtgtaattgaatttttaaaa
gaggaaaaggtagttaatactattgatgagctattatcattaggagtgaatccaaagtat
gaagaaaaaaagataatttcaagtccatttgaagggaaaacagtagtagtaacaggtact
cttaagagctattcaagaggagaaataaagagtaagcttgaaatgttaggagctaaagta
tctggaagtgtaagtaagaaaacagattatgtggtagctggagaagaagcgggctctaaa
ttgataaaggcaaatgatcttggtgttagagttttaacagaagaggagttcgaaactata
gtaaggggataa
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