Cyanobium gracile: Cyagr_2694
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Entry
Cyagr_2694 CDS
T02359
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgc
Cyanobium gracile
Pathway
cgc03030
DNA replication
cgc03410
Base excision repair
cgc03420
Nucleotide excision repair
cgc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cyagr_2694
03410 Base excision repair
Cyagr_2694
03420 Nucleotide excision repair
Cyagr_2694
03430 Mismatch repair
Cyagr_2694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgc03032
]
Cyagr_2694
03400 DNA repair and recombination proteins [BR:
cgc03400
]
Cyagr_2694
Enzymes [BR:
cgc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cyagr_2694
DNA replication proteins [BR:
cgc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cyagr_2694
DNA repair and recombination proteins [BR:
cgc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cyagr_2694
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cyagr_2694
MMR (mismatch excision repair)
DNA ligase
Cyagr_2694
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cyagr_2694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Dyp_perox_N
Zn_Ribbon_TF
DUF6209
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
AFY29786
UniProt:
K9PAM0
LinkDB
All DBs
Position
complement(2608570..2610684)
Genome browser
AA seq
704 aa
AA seq
DB search
MAQARAEELRRLLHRAAHAYYVLDAPVMEDPVYDRLYRELVALEEADPELIRPDSPTRRV
GGAPAEAFTSVAHRIGLLSLDNAFSHDELDGWYTRLLRVLDREAQEGAPAPALPMVGELK
IDGNALALSYEQGVLVRAATRGDGERGEEITANVRTIRSVPLRLDLELPPAWVEVRGEAF
IPEGTFAAINAERAERGEAPFANPRNACAGTLRQLDPKVVASRGLSFFAYTLHLPEGWKA
GPGDPAGPRSQWQALAWLKAAGFRVNPHCALCPDLAAVKAFCDRWEQERRGLPYATDGVV
VKLDDLRLQEEAGFTQKAPRWAIALKYAAEEAPSRLLRLTCQVGRTGVVTPVAEFEPVPL
AGTTVSRATLHNADRLAELDLCAGDTIVVRKAGEIIPEVVRVLVELRPAGARRLELPPTC
PECGSALVREEGEAATRCVNNGCPAILRGSLRHWVSKGALDVDGLGIKLIEQLVDRGLVA
SIPDLYRLDAALLASLERMGETSAAKLVAALETSKQQPWHRQLYGLGIHHVGEVNAKALA
RAFPSAAALEDAALADEANEAGEASEPADRLTAVFGIGPEIAQSLRQWFATPANRLLLEH
LGALGFSLAAPPEPDGSGDGGAPAGMPLAGLTFVLTGTLPSLSRAAAQALIEAAGGKVSG
SVSRKTSYVVAGEEAGSKLTKAQSLGVAVLDEDGLRALLAADPA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcccaagcccgggcggaggaactgcggcggctgctccaccgcgctgcccacgcctac
tacgtgctcgatgctccggtgatggaggacccggtctatgaccggctttaccgggagctc
gtggcactggaggaggccgatccggagctgatccgacccgacagccccacccgccgggtg
ggcggtgccccggccgaggccttcaccagcgtggcccaccggatcggcctgctgagcctc
gacaacgccttctcccacgacgagctcgacggctggtacacccggctgctgcgggtgctc
gaccgggaggcccaggagggcgcaccagcgccggccctgccaatggtgggcgaactcaag
atcgacggcaatgccctcgccctcagctacgagcagggggtgctggtgcgggccgccacc
cggggggacggggagcggggcgaggagatcaccgccaacgtgcgcacgatccgcagcgtg
cccctgcgcctcgacctggagctgccccccgcgtgggtggaggtgcgcggtgaggccttc
atccccgaggggaccttcgcggccatcaacgctgagcgcgctgagcggggcgaggccccc
ttcgccaatccgcgcaacgcctgtgccggcaccctgcggcagctggatccaaaggtggtg
gcgtcccgcggcctgtcgttcttcgcctacaccctgcacctgcccgagggctggaaagcc
ggccctggagaccctgccgggccccgcagccagtggcaggccctggcgtggctgaaggcg
gccgggttccgcgtcaatccccactgcgccctctgccccgatctggcggcggtgaaggcc
ttctgcgaccgctgggagcaggagcgccgcggcctgccctacgccaccgatggggtggtg
gtgaaactcgacgacctgcgcctgcaggaggaggcgggcttcacccagaaggcgccccgc
tgggcgatcgccctcaagtacgccgccgaggaggcccccagccgcctgctgcgcctcacc
tgccaggtgggccgcacgggggtcgtgacgccggtggcggagttcgaaccggtgcccctg
gccggcaccaccgtgagccgcgccaccctccacaacgccgatcgcctggcggagctggat
ctctgcgccggcgacacgatcgtggtgcgcaaggcgggcgagatcatccccgaggtggtg
cgggtgctggtcgagcttcgcccggcgggggccaggcggctggagctgccccccacctgc
ccggagtgcggttcggcgctggtgcgggaggagggggaggccgccacccgctgcgtcaac
aacggctgccccgccatcctgcggggctccctgcgccactgggtgagcaagggggccctc
gatgtggacggcctgggcatcaagctgatcgagcagctggtggaccggggcctggtggcc
tcgatccccgacctctaccggctcgatgccgccctgctggccagcctggagcgcatgggg
gagacctcggccgccaagctggtggccgccctggagacgtcgaagcaacagccctggcac
cgccagctctatggcctcggcatccaccacgtgggggaggtgaatgccaaggccctggcc
cgggccttccccagcgccgcggccctggaggacgccgccctcgccgacgaagcaaacgaa
gccggcgaggccagcgagcccgccgatcggctcacggcagtcttcggcatcggccctgag
atcgcccagtccctgcggcagtggttcgccacgccggccaatcggttgttgctggagcac
ctgggggcgctgggcttctccctggccgcccccccggagccggatggcagcggcgatggg
ggggcaccggcggggatgcccctggcggggctcaccttcgtgctcaccggcaccctcccc
tccctgagtcgcgccgcggcccaggccctgatcgaggcggccggagggaaggtgagcggc
tcggtgagccggaagaccagctacgtggtggccggcgaggaagccggcagcaagctcacc
aaggcccagtccctgggtgttgccgtgctggacgaggacggcctgcgggcgctgctggcg
gcggatccggcctga
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