Cupriavidus gilardii: CR3_1152
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Entry
CR3_1152 CDS
T04050
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgd
Cupriavidus gilardii
Pathway
cgd03030
DNA replication
cgd03410
Base excision repair
cgd03420
Nucleotide excision repair
cgd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CR3_1152 (ligB)
03410 Base excision repair
CR3_1152 (ligB)
03420 Nucleotide excision repair
CR3_1152 (ligB)
03430 Mismatch repair
CR3_1152 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgd03032
]
CR3_1152 (ligB)
03400 DNA repair and recombination proteins [BR:
cgd03400
]
CR3_1152 (ligB)
Enzymes [BR:
cgd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CR3_1152 (ligB)
DNA replication proteins [BR:
cgd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CR3_1152 (ligB)
DNA repair and recombination proteins [BR:
cgd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CR3_1152 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CR3_1152 (ligB)
MMR (mismatch excision repair)
DNA ligase
CR3_1152 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CR3_1152 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ALD90392
LinkDB
All DBs
Position
1:1359301..1361475
Genome browser
AA seq
724 aa
AA seq
DB search
MPAKKHGAPTPADAPRTAAAKAADAAEAARPDNSADKPDTPAARADWLREQIEHHNYQYY
VLDAPTIPDADYDALFRELQELEATHPELLTPESPTQRVGGQPLTAFATVRHRLPMLSLN
NAFDDDDVIGFDRRCAQGLGRTVAAEGAADLFSAADAVEYACELKFDGLAMSLRYENGRL
VQAATRGDGETGEDVTANVRTIKAIPLKLKAGAPAVIEVRGEVFMYRRDFDRLNARQAEA
GEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELDGEPRPATHEALLERFAALGL
PVCAERAVVKGAQGLLGFYRGVGRKRDSLPYDIDGVVYKVNAVDEQERLGFVSRAPRFAL
AHKFPAQEMTTVVEDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVHI
GDTVIVRRAGDVIPEVVAVVPERRPAEARPFVMPTECPVCGSHIERLEDEAIARCTGGLI
CAAQRKQALLHFAQRRAMDIEGLGEKVVDQLVEQGIVRTPADLYKLGVAKLAALDRMADK
SASNLVAAIDASRATTLNRFIFALGIRHVGEATAKDLARHFGKLDGLMAADEAALLEVND
VGPVVAQSIAHFFAEAHNVEVIEQLRAAGVHWPESEPAARAPAPLAGKTFVLTGTLPTLS
REEAKALLEGAGAKVAGSVSKKTDYVVAGEEAGSKLAKAQELGVPVLDEAGMMALLQQHG
VAGG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaaagaaacacggcgctcccactccggccgatgcgccgcggaccgctgcggcc
aaagcagccgacgcggccgaagccgcgcgtccggacaattccgccgacaagcccgatacc
ccggccgcgcgcgccgactggctgcgcgagcagatcgagcaccacaactaccagtattac
gtgctcgacgcgccgaccattccggacgccgattacgacgcgctgttccgcgaactgcag
gagctggaggccacgcatccggaactgctgacgcctgagtcgccgacccagcgcgtcggc
gggcagccgctgacggcgttcgcgacggtgcggcaccggctgccgatgctgtcgctgaac
aatgcgttcgacgacgacgacgtgatcggtttcgatcgccgctgcgcgcagggcctgggc
cgcaccgtcgccgccgagggcgccgcggacctgttctcggccgccgacgcggtcgaatat
gcctgcgagctgaagttcgacggcctcgcgatgtcgctgcgctacgaaaacggccggctg
gtgcaggccgccacgcgcggcgatggcgagaccggcgaggacgtgaccgccaatgtgcgc
acgatcaaggcgattccgctgaagctgaaggccggcgcgccggcggtgatcgaggtgcgc
ggcgaggtcttcatgtaccggcgcgatttcgaccggctcaatgcgcgccaggccgaggcc
ggcgagaagaccttcgtcaatccgcgcaacgccgcggccggcagcctgcgccagctcgat
ccgcgcatcaccgcgcgccgtccgctgtcgttctttgcctatggtcttggcgagcttgac
ggcgagccgcgcccggccacccacgaggcgctgctcgaacgctttgccgcgctcggcctg
ccggtctgcgccgagcgcgccgtggtcaagggcgcgcaggggctgctcggcttctaccgc
ggcgtcggcaggaagcgcgacagcttgccctatgacatcgacggcgtggtctacaaggtc
aatgcggtcgacgagcaggaacgcctgggcttcgtctcgcgcgcgccgcgctttgcgctg
gcgcacaagttcccggcgcaggaaatgaccacggtggtcgaggacatcgaagtccaggtg
ggccgcaccggcgcgatcacgccggtggcgcggctggcgccggtgttcgtcggcggcgtc
acggtgaccaatgccacgctgcacaacgaggacgaaatccgccgcaaggacgtgcatatc
ggcgacaccgtgatcgtgcgccgcgccggcgacgtgattccggaagtggtcgcggtggtg
ccggagcgccggcccgccgaggcgcggccgttcgtgatgcccaccgagtgcccggtgtgc
ggctcgcatatcgagcggctcgaggacgaggcgatcgcacgctgcaccggcgggctgatc
tgcgcggcgcagcgcaagcaggcgctgctgcatttcgcgcagcgccgcgcgatggatatc
gaagggctcggcgaaaaggtggtcgaccagctggtcgagcagggcatcgtccgtacgccc
gccgacctgtacaagctcggcgtggccaagctggcggcgctggaccgcatggccgacaag
tcggccagcaacctggtcgccgcgatcgacgcgtcgcgcgccaccacgctgaaccgcttc
atcttcgcgctgggcatccgccatgtcggcgaggcgaccgccaaggacctggcccggcat
ttcggcaagctcgacgggctgatggcggcggacgaagccgcactgcttgaggtcaacgac
gtcggtccggtggtcgcgcagtcgatcgcgcatttctttgccgaggcgcacaacgtcgag
gtcatcgagcagctgcgcgccgccggcgtgcattggcccgagagcgagccggccgcgcgc
gcgccggcgccgctggccggcaagaccttcgtgctgaccggcacgttgccgacgctgtcg
cgcgaggaggccaaggcgttgctcgaaggagccggcgccaaggtcgcgggctcggtgtcg
aagaagaccgactacgtggtggcgggcgaagaggccggcagcaagctggccaaggcgcag
gagcttggcgtgccggtgctggacgaggccggcatgatggcgctgctgcagcagcacggg
gtggcgggaggctga
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