Clostridium gelidum: psyc5s11_04030
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Entry
psyc5s11_04030 CDS
T08447
Symbol
ligA2
Name
(GenBank) DNA ligase 2
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgel
Clostridium gelidum
Pathway
cgel03030
DNA replication
cgel03410
Base excision repair
cgel03420
Nucleotide excision repair
cgel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
psyc5s11_04030 (ligA2)
03410 Base excision repair
psyc5s11_04030 (ligA2)
03420 Nucleotide excision repair
psyc5s11_04030 (ligA2)
03430 Mismatch repair
psyc5s11_04030 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgel03032
]
psyc5s11_04030 (ligA2)
03400 DNA repair and recombination proteins [BR:
cgel03400
]
psyc5s11_04030 (ligA2)
Enzymes [BR:
cgel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
psyc5s11_04030 (ligA2)
DNA replication proteins [BR:
cgel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
psyc5s11_04030 (ligA2)
DNA repair and recombination proteins [BR:
cgel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
psyc5s11_04030 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
psyc5s11_04030 (ligA2)
MMR (mismatch excision repair)
DNA ligase
psyc5s11_04030 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
psyc5s11_04030 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
DNA_ligase_ZBD
RNA_pol_A_CTD
POLH-Rev1_HhH
PADR1_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
BCZ44336
LinkDB
All DBs
Position
470961..472952
Genome browser
AA seq
663 aa
AA seq
DB search
MDKIERIKELVEKLNRYSYEYYSLDNPSVSDKDYDKDYYELQELEKETEYILPYSPTLRV
GDVVLQGFKKYTHKARLWSLDKAQSLQEIRDWHNRNVKFIEDMKSKGEDLPDLKYVLTKK
FDGLTINLTYNNDGILEIAATRGTGNIGEEVTSQVKTIKPIPLKIHSKDVLEVHGEAVMT
QEAFKNYNETSKAPLKNLRNGAAGALRNLNVKETAKRNLSAFFYDVGYKEGNQFKTYLEM
MEFIKEQGLPVDEYIKVCTSIDEIEKEIEYIKDIRFDLNYDIDGLVVAIDDIRTRELLGY
TVKFPKWAIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEPVELAGVTVKRATLNNMD
DIARKGVRIGAEVFVRRSNDVIPEIMGIVTETVEGSEEIKVPEVCPACGSHLILNGAHYF
CENTLSCKPQLVKSIVHYACREAMNIEGFSERTAEQLFEKLNIKSISDLYKLKEEELIDL
EKFGTKKAQNLLDAIEKSKDCELYAFIYALGIPNVGVKTAKDLVNKFKSIEGLKNATFEE
LIGVQDVGDIVAQDVMGFFKEEKVMETIQELLALGVNPRFSEKEVIENPFEGKTVVATGS
LKNYSRTEIKDKLESLGAKVSGSVSKKTDYVIAGEAAGSKLTKAEELGVKVLSEEEFEKI
LRG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggataaaattgaaagaataaaagaacttgtggaaaaattaaatagatattcgtatgaa
tattattctttagataacccttctgtaagtgataaggattatgataaagattattatgag
cttcaagagttagaaaaagaaactgaatatatacttccttattcaccaacattaagagtt
ggcgatgtagtattacaaggatttaaaaagtatactcataaagcaagactttggagttta
gataaggctcaaagtcttcaagaaataagagattggcataataggaatgttaagtttatc
gaagatatgaaaagtaaaggtgaagacctaccagatttgaaatacgtacttacaaaaaaa
ttcgatggattaacaattaatttaacatataataatgatggtatacttgaaattgcagca
acaagagggacaggaaacattggtgaagaagtaacatcacaagtaaaaacaataaaacca
atcccacttaagattcatagcaaagatgttttggaagttcatggagaagctgtgatgact
caagaagcttttaaaaattataatgaaacttcgaaagctccattaaagaatttgagaaat
ggagcggcaggggctttaagaaatcttaatgtaaaagaaactgctaaacgaaatctttct
gcatttttttatgatgtgggatataaagaaggaaatcaatttaagacttatttagaaatg
atggaatttataaaagagcaaggcttgcctgttgatgagtatattaaagtttgcacatct
atagatgagattgaaaaggaaattgaatatataaaagatattagatttgatttaaattat
gatatagatggattagtagttgcaatagatgatataagaacaagagaactactcggatat
acagttaaatttcctaaatgggcaattgcatttaaatttgaagctcaagaagcaacaact
aaacttttagatgttgaatggaatgttggaagaagtggaagagttggaccaacagcaata
ctagagccggttgaacttgcaggtgttacagttaaaagagctactcttaataatatggat
gatattgcaagaaaaggtgttagaattggagcagaagtatttgtacgtaggagcaatgat
gttattcctgagataatgggaattgttacagaaacagtagaaggctcagaagaaatcaaa
gtaccagaagtttgtcctgcatgtgggagccatttgattttaaatggagcacattatttt
tgtgaaaatacattatcatgtaaacctcaattggttaaaagtatagtccattatgcttgt
agagaagctatgaatatagaaggtttttctgaaagaacagcagagcaattatttgaaaag
cttaatattaaatctatttcggatttatataaattaaaagaagaggaattaatagattta
gaaaagtttgggactaaaaaagcacaaaaccttttagacgctattgaaaaaagtaaggat
tgcgaattatatgcatttatatatgctttaggaattccaaatgtgggagtaaaaacagct
aaagatttagtaaataaatttaaatccatagaaggtttgaaaaatgctacatttgaagaa
cttataggagttcaagatgttggagatatagttgcacaagatgttatgggattctttaaa
gaagagaaagtaatggaaacaatacaagaattattagccttgggagttaatccgagattt
agtgaaaaagaagttatagaaaatccttttgaaggaaaaactgttgttgcaactggttcg
cttaagaattattctagaactgagataaaagataaactagaaagtttaggtgcaaaagtt
tcaggaagtgttagtaagaaaacagattatgtaatagcaggagaagctgcaggatcaaaa
ttgactaaagcagaagaattaggagtgaaagttctttcagaagaagagtttgagaaaata
ttaagggggtag
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