Corynebacterium glutamicum SCgG2: C629_07040
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Entry
C629_07040 CDS
T02691
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cgg
Corynebacterium glutamicum SCgG2
Pathway
cgg03030
DNA replication
cgg03410
Base excision repair
cgg03420
Nucleotide excision repair
cgg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C629_07040 (ligA)
03410 Base excision repair
C629_07040 (ligA)
03420 Nucleotide excision repair
C629_07040 (ligA)
03430 Mismatch repair
C629_07040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgg03032
]
C629_07040 (ligA)
03400 DNA repair and recombination proteins [BR:
cgg03400
]
C629_07040 (ligA)
Enzymes [BR:
cgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C629_07040 (ligA)
DNA replication proteins [BR:
cgg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C629_07040 (ligA)
DNA repair and recombination proteins [BR:
cgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C629_07040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C629_07040 (ligA)
MMR (mismatch excision repair)
DNA ligase
C629_07040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C629_07040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AGN22008
LinkDB
All DBs
Position
1500289..1502331
Genome browser
AA seq
680 aa
AA seq
DB search
MTEDNAQLRRTWNDLAEKVRYHRDRYYNEQPEIPDADFDALFKQLQQLEEDHPELAVPDS
PTMVVGAPVAEQSSFDNVEHLERMLSLDNVFDEQELRDWLGRTPAKQYLTELKIDGLSID
LVYRNGQLERAATRGDGRVGEDITANARVIEDIPHQLQGTDEYPVPAVLEIRGEVFITVE
DFPEVNAQRIADGGKPFANPRNAAAGSLRQKNIEDVKKRRLRMISHGIGFTEGFSPASQH
DAYLALAAWGLPTSPYTEAVTDPEDVVKKVSYWADHRHDALHEMDGLVIKVDDIASQRAL
GSTSRAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMEPVLVAGSTVSMATLHN
QSEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVELRDGTEREYIFPTLCPECGTRLAPAKA
DDVDWRCPNMQSCPGQLSTRLTYLAGRGAFDIEALGEKGAEDLIRTGILLDESGLFDLTE
DDLLSSNVYTTNAGKVNASGKKLLDNLQKSKQTDLWRVLVALSIRHVGPTAARALAGRYH
SIQALIDAPLEELSETDGVGTIIAQSFKDWFEVDWHKAIVDKWAAAGVTMEEEVGEVAEQ
TLEGLTIVVTGGLEGFTRDSVKEAIISRGGKASGSVSKKTDYVVVGENAGSKATKAEELG
LRILDEAGFVRLLNTGSADE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaagataatgctcaactgcgtagaacgtggaacgacttagccgagaaggttcgt
tatcaccgagatcgttattacaacgaacagccagagatccctgatgctgattttgatgcg
ctttttaaacagcttcagcagttggaagaagaccacccggagctcgccgtccctgatagc
cccaccatggttgtgggcgctccggtggcagagcaatcaagctttgacaatgttgagcac
ttggagcgaatgctcagcttggacaatgtttttgatgagcaggagttgcgtgattggttg
ggcaggacgccagccaagcagtatttgacggagttgaaaattgatggcttgtccatcgac
ttggtgtatcgcaatggccagttagagcgtgccgctactcgtggtgatggtcgcgtgggc
gaggacatcacggccaatgctcgcgtgatcgaagatatcccacaccagcttcagggcact
gatgaatatcctgtgcctgctgtgctggaaattcgcggtgaggtgttcatcactgtggag
gatttcccagaggtcaacgcgcagcgcattgctgatggtggcaagccgtttgccaacccg
cgtaatgctgcggctggttctctgcgtcagaaaaatattgaggacgtgaagaagcgtcgc
ctgcggatgatcagccatggcatcggtttcactgaaggctttagccctgcgtctcagcat
gatgcgtatctggcattggctgcctggggtttgcccacctcgccgtacacagaggctgtg
actgatccagaagatgtggtgaaaaaggtcagctactgggctgatcaccgccacgacgca
ctccatgagatggatggcctggtaattaaggtcgatgacatcgcatctcagcgtgctttg
ggctccaccagccgcgcgcctcgctgggccattgcgtacaagtaccctccggaggaggtc
accaccaagctgcttgatattcaggttggcgttggtcgcaccggccgtgtgaccccattc
gcggtcatggagcctgttcttgttgcaggatcaacggtgtctatggcgacgctgcataac
cagagcgaagtcaagcgtaaaggcgtactcatcggtgacaccgtggttatccgcaaggcg
ggcgaggttatcccagaggtgcttggccctgtcgtagagcttcgtgacggcacagagcgc
gagtacatcttcccaacgctgtgcccagaatgcggtacccgtctggcgcccgcgaaggcc
gatgacgtggattggcgttgccccaacatgcaaagctgtccaggtcagctgtccacgcgt
ttgacctaccttgctggtcgtggcgcttttgatattgaagcattgggcgaaaagggcgct
gaagacctcatccgcaccggcattttgcttgacgagtctggcctgttcgacctcacagag
gacgatctgctgagctccaatgtctacaccaccaacgccggcaaagtgaatgccagcggc
aagaaactgctggacaacctgcaaaaatccaagcagaccgacctctggcgagtcctcgtg
gcactatctatcaggcacgtaggccccaccgcagcgcgcgcccttgcaggtcgctatcac
tccatccaggcgcttatcgacgcccccctcgaggaactctccgaaaccgatggagtaggt
accatcattgcccaatccttcaaggactggttcgaggttgattggcacaaggccatcgtg
gacaagtgggcagccgctggtgtgactatggaggaagaagtaggggaggtcgctgaacaa
acccttgaaggcctaaccatcgtggtcaccggaggattggaaggcttcaccagagattcg
gtgaaggaagccatcatctcccgtggcggaaaagcctctggatctgtctcgaaaaaaact
gactacgtggtggttggtgaaaacgcaggttccaaggccaccaaggcagaagaactaggg
ctgcgcattctggatgaggcaggattcgtccgtttgctcaataccggctcagctgacgaa
tag
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integrated database retrieval system
