Cryptococcus gattii: CGB_E3020C
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Entry
CGB_E3020C CDS
T02232
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cgi
Cryptococcus gattii
Pathway
cgi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CGB_E3020C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgi03400
]
CGB_E3020C
Enzymes [BR:
cgi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CGB_E3020C
DNA repair and recombination proteins [BR:
cgi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CGB_E3020C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DUF6305
Motif
Other DBs
NCBI-GeneID:
10189724
NCBI-ProteinID:
XP_003194539
UniProt:
E6R6Y0
LinkDB
All DBs
Position
E:complement(join(571757..572563,572803..573008,573062..573149,573212..573279,573337..573379,573423..573482,573534..573684,573735..573980,574030..574128,574349..574824,574877..575207,575269..575291))
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AA seq
865 aa
AA seq
DB search
MTDILFESFAKLIYRLGNPPRSQVTNDLYSPDEIFTSWLNHLCKPFPIHTGKRLFRLLFP
HLGPRRRYGLKEQKLVQELSKILGAKTLNQWDNVRWNDIGETGTGCLGHEIEALAKNRST
SGENGRSLLTISALDTLLDELAASSSFSQLSQLPDAPRPIEKILTILYCEWKLSPYALSV
LTQIILRDLRPLQDPIPCLPIRNPTALLRIKTKNSPCQLSLKDAMKCWDKRMWDLYNGGY
GNLDLCADLLEQNPLMDPSKNHGPIVGVNVAVSSGFFMQIHVDAQNPYPKITIFSKSTRD
STQDRLNTHAIICHALNLPVNPSLPLHRLLSQRTQSTIAFCPQRKVHKSVILEAEVVPFN
ENSREGDRGPGIEEFWWLGHAGVSAGAMNWAFSGKSLPSVTSRHLCLVFFDILHIDGEGL
LNHTYEERRRLLEDVIMIIPGFSQLAESTKISLQGQPEHALDDLEYVFKKNINLREEGLV
IKAAESTYTKMQWQWVKLKKDYIPNLGDCIDLVLLGAGWDINRARELRVDTSVFTTFYVG
ALTNAERAKSRCETPHFEILFLVSYGCSRSELEAYNENIRLGRWKNKPFDKDDPFKRLYE
LRWPRLQKIYDPRERQWTEALSALSLISIAYSSLGYKCLSASSYGKNSPRFQDSIDAAWR
SASHLSVTDIPDFLSPSPKLQGQKRSKSEADLSGCKVKDEPLTPRSSPLGPSATDRVEIA
KRKYTEMASRRLREVMTKGEGMTGESRTEIPPAGYRPTTTAASSVADQIIQSKSRRLSAS
AGLSLSVIPFKEKVQLDKLHGLTSLITTAGQSTEEPLAKRLSEASGIAATTMQQKARNSD
VQRWGKPLSLKSRIKLAMRQAGKVS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgacggatattttgttcgaaagctttgctaagcttatctatcgccttggaaatccaccg
aggtctcaagtgaccaacgacctctattcgccagatgaaatattcacctcatggctcaac
catctgtgcaaaccctttcccattcacactgggaaacgtctatttcgtctgctattcccc
catttgggacccagaagaagatatggactgaaggaacaaaagcttgtccaggagctttcc
aaaattttgggcgcaaaaaccttgaaccaatgggacaatgttcgctggaatgatataggt
gaaacagggacaggctgtctaggtcatgagatagaagcactagcaaaaaatcgatcgaca
tccggcgagaatggcagatcccttctaaccataagtgcgctggacaccttgcttgatgag
ctagccgcttcttcatcattctctcaactgtctcaacttcctgatgctcctcggccaatt
gaaaaaatacttactattctatattgcgaatggaaactttcaccctacgctctttccgtt
ctcactcagattattttgcgcgatctgcggccccttcaggatccgatcccatgtctaccc
attaggaaccctactgctttgctgcggatcaagactaaaaattcgccttgccagctgagc
ttaaaagacgcaatgaagtgctgggataaacgtatgtgggatctctacaacgggggatat
ggtaacttggacctttgcgcggatcttctggaacaaaatccactaatggacccctccaag
aaccatgggcctatcgtaggggtcaatgtcgcagtaagttcagggtttttcatgcaaatt
cacgtggatgcccaaaatccatatcccaagattacgatttttagcaaatccaccagggat
agcactcaagacaggctcaatactcatgctattatatgccatgctctcaaccttcctgta
aatccgagtcttcccttgcaccggttactgtcacagagaacacagtcaactattgccttt
tgtcctcaacgcaaggttcacaaatctgtcattctagaggcagaggttgtgcccttcaac
gaaaactctagagaaggagatcgtgggccaggaatagaggagttctggtggttgggacac
gcaggggtttcagcaggggctatgaactgggcattctccggcaaaagcctcccgagcgtt
acaagccgtcatttgtgcctcgttttctttgatatattgcatatcgatggtgaaggactg
ctcaaccatacttacgaagagcgaaggaggttgctagaggacgtcatcatgattataccg
ggctttagtcagctggctgaaagcaccaaaatttctttgcaaggccagccggagcatgcc
ttggatgacctggaatatgtcttcaaaaagaacatcaatcttcgggaagagggtttggtt
atcaaagccgccgagtccacttacactaaaatgcaatggcaatgggtaaaattgaagaaa
gactacattccaaacctgggtgattgtattgatttggtccttcttggcgcaggctgggac
attaatcgggcacgagagttacgagtcgatacatctgtctttaccacgttctacgttggt
gcactcactaacgcagagcgcgccaaatctcgctgcgagactcctcattttgagattcta
ttcctcgtttcttatggttgtagcagaagtgaactggaggcgtataatgagaacatacga
ctaggtagatggaaaaataaaccatttgacaaggacgatccatttaaacgactttacgaa
ttacgatggccaaggctccaaaagatctatgatcctcgcgaacgacaatggacggaagct
ctttctgcactttctttgatttcgatcgcctactcttccctaggctacaagtgtttatca
gcgtcatcctatggaaaaaattcccctcgctttcaagactcgatagacgccgcttggaga
tcagcaagtcacctcagcgttacggacatacctgatttcctatcgcctagtccaaaattg
caaggccagaagaggtcaaaatcagaggccgacctatcgggctgcaaggtgaaagatgaa
cctttgacgccacgatcgtcccccctaggaccgtcagctacagatagggtggaaattgct
aaaaggaagtacacagaaatggctagcagacgactgagagaggtcatgacaaaaggggaa
ggaatgactggtgaatcaaggactgagattccaccagcgggatatcgcccaacgactaca
gcagcatccagcgtggctgatcaaataatccagtcaaagagcagaagactgtccgcatcc
gctggtctatccttgtccgtgatacctttcaaagagaaagtgcaattggataaattacat
ggtttaacctcccttataacgactgctggtcagtcgacggaagagccattggccaagcga
ctgtcggaggcatctggaatagctgcgacaactatgcagcaaaaagcaagaaattcagat
gttcaaaggtggggaaagccattgtcattaaagtcaagaataaagctggcaatgagacag
gctgggaaggtttcgtaa
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