Carassius gibelio (silver crucian carp): 127944512
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Entry
127944512 CDS
T08819
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib04623
Cytosolic DNA-sensing pathway
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
127944512
04623 Cytosolic DNA-sensing pathway
127944512
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127944512
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgib04054
]
127944512
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127944512
Pattern recognition receptors [BR:
cgib04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
127944512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
ResIII
DEAD
Helicase_C
SNF2-rel_dom
PhoH
ERCC3_RAD25_C
AAA_19
AAA
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
127944512
NCBI-ProteinID:
XP_052396462
LinkDB
All DBs
Position
A23:24735815..24750223
Genome browser
AA seq
939 aa
AA seq
DB search
MYELEKENLRRFSDYITKFLRPSVVKNFMTIYLDKEMVESILSTEMTSVTTAAQMLLDQM
YYLEEVGWFQAFLDTLLASEYTGLHDAIKEWDFQKLEELNEHRRFLERIEPSITKHMKPS
ELLAHMNDCLKPRECEEIRAEESQRGRIAASEKLVMSLLRSDKPNWFKLLKIALENCDLD
EARDMLETNGGGVEVKAGEWDGEAEDVMTTVCFEFREEAETEDVLLSLNNLTVTEEPGGF
TGKPERSGERKLREYQKELTAAAVQGQNTIICAPTGCGKTIVALAICEYHLKQFPERAKI
VFLATKVEVYEQQYKLFKEHFSSKDPNVRVTGMCGDMDHVPVHCLIENNDIVVMTAQILV
NALQSADVTSLEMLSLILFDECHNTTGKHPYNNIMTRYLDTKLSSGTHLLPQIVGLTASV
GIGSFKNGLEAENNILQLCANLDTRVITTVTQHKDELKSYVHTPEKMFFEVQQCTSHPFI
RIIKNIMSNIEQLAQKTFNIENLSNIQNREYGSQKYEQWIVSVQKSCKVLQMKNADEERR
ICRDLYNYTEHLRKYNDALIINEDARTKDALDYLDAFFDQVRNAGYGETERKLTALYDCQ
RPQLLRLATEGEQNPKLDELKFILEEEYHNNDQTRTVMFVKTRALADAMKKWIDETDSLK
FLKPGVLIGKGRKSNFTGSGMTPNNQRGILESFKSSDQSKMLIATSVADEGIDIPQCNLV
LMYEYVGNVVKMVQVRGRGRAEGSRCFLISSNKERIAKEKINMFKEKMVEEAIEQLQSRP
ADLRNKVDMFQREDKARRDHISASPEKPKTQGSYELLCCKCKRFACRSDDIRVVQGAHHI
VLDRSMFERCTTAPHKNPRSFSGFCKKEKMLCAECKQDWGLIASYLTIQDLPLVKIESYV
VQDCVTGRQQYFRKWRDVTFAMREFDMTEIPPETWRPRD
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggagaaggagaatctgcggcgctttagcgattatatcacgaagttttta
cgaccgtcagtcgtcaagaacttcatgacgatatacctcgataaagagatggtggagagc
attctctctacagagatgacgtctgtgaccacagctgcccagatgctgctggaccagatg
tattatctagaggaagtgggctggtttcaagcttttctggacaccctgctggcctcggag
tacaccggactgcacgacgccattaaagagtgggacttccagaagttagaggagctgaat
gaacacaggagatttctggaaaggatcgaaccgtcaatcacgaagcacatgaagcccagc
gagctgctcgcgcacatgaacgactgtctgaagcccagagagtgtgaggagatccgggcg
gaggagagtcagcgcggtcgtatcgctgccagtgagaaactggtgatgagtcttctgcgc
tcagacaaacccaactggttcaaactgctgaagatcgctctggaaaactgtgacttagac
gaggctcgagacatgctggagacaaatggaggaggtgtggaggtgaaggccggtgaatgg
gacggagaggcggaggacgtgatgacgaccgtgtgctttgagttcagagaggaggccgag
actgaagacgtgctgctgagcctcaacaacctcacggtcacagaggaacctggcggcttc
acagggaaacctgagcgatcaggtgagcgcaagctgagagaatatcagaaggagctgacc
gccgcggccgtccagggccagaacaccatcatctgcgctcccacaggatgtggaaaaacc
atagtggccctggccatctgtgaatatcacctgaagcagtttcctgaaagagcaaagatc
gtgtttctggcgaccaaggtcgaagtctatgaacagcagtacaaacttttcaaggagcac
ttttccagcaaggatcccaacgtcagggtgacggggatgtgtggtgatatggaccatgtg
cccgtgcactgcctcatagagaataatgatattgtggtgatgacggctcagatcctggtg
aacgcgctgcagagcgctgacgtgacgtctctggagatgctgtcactcatcctgttcgac
gagtgtcacaacacgaccggaaaacacccctacaacaacatcatgacccgctacctggac
accaaactctccagcggcacacacttactgccacagattgtgggcctgaccgcgtcggtc
ggcatcggttcattcaagaacggactggaggcagagaacaacatcttacagctctgtgcc
aacctggacaccagggtcatcaccacagtcacccagcacaaggatgagctcaagtcatac
gtgcacacgcctgagaaaatgttttttgaggttcaacagtgcacgagtcaccccttcatc
agaataatcaaaaacatcatgagtaacatcgagcagctggcgcagaagaccttcaacatc
gagaacctgtcgaacatccagaaccgcgagtacggctcgcagaaatatgagcaatggatc
gtctctgttcaaaagagctgcaaagtcttacagatgaagaacgcagacgaggagagacgc
atctgcagagatctctacaactacactgaacacctgcggaaatataacgatgctctgatc
attaatgaagacgcgcggactaaagatgcgctggattatctggacgcgttctttgatcag
gtccgaaacgccggctacggcgagaccgagaggaagctgaccgcgctctacgactgtcag
cggccgcagttactgcgtctggccaccgagggggagcagaaccctaaactcgatgagctg
aagttcatcctggaggaagaataccacaataacgatcagacgcgcaccgtcatgttcgtc
aagacacgagccctcgccgacgccatgaagaaatggatcgacgagactgattccctgaag
ttcctgaagcctggagtcctgattggaaaaggacggaaatccaactttactggatcagga
atgactccgaacaatcagagagggattctggaatcctttaagagctctgatcagagcaag
atgctcatcgccacatcggtcgctgatgaaggcatcgatatcccacagtgcaacttggtt
ctgatgtatgaatatgtgggaaacgtggtaaagatggtgcaagttcgaggtcgtggtcga
gcggagggcagccggtgtttcctgatctccagtaataaggagcgcattgcgaaggagaaa
ataaacatgtttaaggagaagatggtggaggaggccatcgagcagctgcagagccgcccc
gccgacctcagaaacaaggtggacatgttccagagggaagacaaagcccggagggatcac
atcagtgccagtcccgaaaaacccaaaacccagggcagttacgagctcctctgctgcaag
tgcaagaggtttgcatgcaggagtgacgacatcagagtcgtgcagggcgctcatcacatc
gttctggatcgctcaatgttcgagcgctgtacaactgctccccataagaacccaagatcc
ttctcgggcttctgtaagaaagagaagatgctctgtgccgagtgcaagcaggactggggt
ctcatcgcctcgtacctcaccatccaggatctgccgctggtgaagatcgagagctatgtg
gtgcaggattgtgtcaccggcagacagcagtacttcaggaagtggcgtgacgttacgttt
gccatgcgtgagtttgacatgacggagatcccacctgagacgtggcggccgagagactga
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