Carassius gibelio (silver crucian carp): 127949640
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Entry
127949640 CDS
T08819
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127949640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127949640
Enzymes [BR:
cgib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127949640
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
127949640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
RTT107_BRCT_5
ATG17_like
Motif
Other DBs
NCBI-GeneID:
127949640
NCBI-ProteinID:
XP_052403037
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All DBs
Position
B1:18752047..18757055
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AA seq
910 aa
AA seq
DB search
MMEGASKSDAPPQTAVAAQVPFIDLCTVLENIQKTKLRPDKSKILKDFIDSWRKFHAALH
KDNSNTTDSFYAAIRLIVPQFERERMAYGIKENMLAKLYIEVLGLPKNGPEANKLLNYRA
PTTSQGEAGDFALMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHL
ITQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVTTDLNKVCRQLHDPSVS
LSEVSIDLFSAFKPMLAAVANIRQIEKQMSNRTFYIETKLDGERIQLHKAGDVYKYYTRN
SYEYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNPTTETFMQKGSKFDIKRL
MDDSDLQTCFCVFDVLLVNNQKFANEPLKKRYEILENIFTPVKGRIQLVAKAEGKTMQEV
VNSLNEAIDNLEEGIMVKDPMSIYKPDKRGEGWVKIKPEYVDGLMDELDLLIVGGYWGKG
RRSGMLSHFLCAVADVPSPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYNRNNP
PAAILCGTEKPEVYIEPRNSVIIQVRAAEIVSSEMYKTNCTLRFPRIERIREDKEWYQCM
TLAELSQFRSRASGKLASRHLHIQEDQPEKKKHKFVAKPKKTIGVIDHFKSQDLSTVTKE
MDMFEDVEFCVINGNDEHSKAELEKVVARCGGIVVQNPGKDTYCVIAAVQNMRVKNLISS
DQHDVVWATWLLECLENKQVIPWQPRHMIHMSPSTREHFAKEYDRYGDSYYVDTDEQQLR
EVFERIGPTESECLSVAQIEAENGWDDMPTSIFRPYTAYFDRCADFGDPKTIILGTSLDT
RALEFRFHGGTVVEKLKEGITHVVVESERRTLDLKTLRRLYAKKFKIVRESWVTDSIKAG
HVEDETGYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaggtgcctcgaaaagtgatgccccaccacagacggctgttgctgcacaagtt
ccattcatcgacctctgcacagttctggagaacatccaaaagaccaaactccgaccagac
aaaagcaaaattctgaaggattttatcgattcttggaggaagttccatgcagcgcttcac
aaggacaattccaataccacagattcattttacgcagccatacgtcttattgtgcctcaa
tttgagcgagagcgaatggcttatggtataaaagaaaacatgcttgccaaactatatatt
gaagttttaggcctacctaaaaatgggcctgaagcaaacaaactcctaaattatagagct
ccaaccacaagtcagggagaagcaggtgactttgcccttatggcctacttcgtcctgaaa
aaaaggtgtacaagtcaggggaatttaagcattaaagaagtcaatgactttttggattcc
gtagctatcaacaatgccagcaaacagaaggatcaagtgaagaaaagccttttgcatctg
ataacccagagttcagctttggaacagaagtggctcattagaatgatcctcaaggacatg
aaacttggcattagcaaggagacagtgcttcaggtcttccatccagatgcagcagaactc
tacaatgtcaccacagatctgaataaagtctgccgacaacttcatgatccatctgtgtcc
ctcagtgaggtctccatcgatctgttttctgcttttaaaccaatgctggctgccgttgcc
aacatcagacagatagagaaacaaatgagcaaccggacattctatattgagacaaagctc
gatggtgaacgcattcagctgcacaaagctggagatgtttacaaatactacaccaggaac
tcttatgagtacacgcaacagtttggggcctctccactagagggctccctcacaccatac
attcacaacgtcttcaaacctcatgtggtaaactgcatattggatggagagatgatggct
tataaccctacaacggagaccttcatgcagaagggcagtaagtttgatattaaaaggttg
atggatgactctgatttgcaaacctgcttttgtgtatttgatgtcttattagtaaacaat
cagaagtttgcaaatgaacctctcaagaagcgctacgaaattcttgagaatatctttacg
ccagtcaaaggtcgtatccagttggtggcaaaagctgaaggcaaaaccatgcaagaagtg
gtgaattctctcaatgaggccattgacaatctggaagaggggattatggttaaggatccc
atgtccatctacaaaccagataaacggggcgaaggatgggtgaaaattaagcctgaatat
gtggatggtctgatggatgagcttgatctgctgatagtgggaggctactggggtaaaggc
aggagaagcgggatgctctctcattttctgtgtgcggtagcagatgtgccgagtccaggg
gagaagcccacggtgttccacaccctctgccgcattggatcaggctacactatgaaagaa
ctgtacgatcttggtctgaagttggccaaacattggaaagtttacaacagaaataatcct
ccggctgccatcttgtgtggaacagagaaaccggaggtttacatagaaccacgcaactca
gtgatcatacaagtcagagctgcagagatcgtctccagtgaaatgtataagaccaactgc
acattacgtttccccagaatagaaagaatcagagaagacaaagagtggtatcagtgcatg
accttggctgaactgagccagttccgctccagagcttctggaaagctggcgtccagacat
ctacatatccaagaggaccagcctgaaaagaagaagcacaagttcgtagccaagcccaaa
aaaacaatcggagtcattgaccactttaaatctcaggatttatccacggtcaccaaagag
atggatatgtttgaagatgtggagttttgtgtgataaatggcaatgatgaacattccaag
gcagagcttgagaaagttgtggcgcgctgtggaggcatcgttgtgcagaaccctgggaaa
gacacatactgtgtgattgcagctgtgcaaaacatgagagtaaagaacctcatctcctca
gaccaacatgatgtggtgtgggctacttggctgctggagtgtctggaaaataagcaggtt
ataccatggcaaccacgccacatgatccacatgtcaccttccaccagggaacacttcgct
aaagagtatgatcggtacggagacagttattatgttgacactgatgaacaacagctgagg
gaagtctttgaacggattggccccacagaatctgaatgtttgtctgtggcacagatagaa
gcagagaacggctgggatgacatgcccactagcatttttaggccctacactgcatacttt
gaccggtgtgctgacttcggagatccaaaaaccatcatactgggtacaagtttggacacg
cgtgccttagaattccgattccatggtggtacagttgtggagaaactgaaggaaggaatc
acgcatgtcgtagtagaaagtgaaagaagaactctggatttgaagacgttgaggcgactt
tatgctaagaagttcaaaattgttcgagagtcttgggtgaccgattctatcaaagcaggc
catgtagaggacgagactggctacttaatataa
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