Carassius gibelio (silver crucian carp): 127957622
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Entry
127957622 CDS
T08819
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04010
MAPK signaling pathway
cgib04137
Mitophagy - animal
cgib04141
Protein processing in endoplasmic reticulum
cgib04210
Apoptosis
cgib04217
Necroptosis
cgib04621
NOD-like receptor signaling pathway
cgib04622
RIG-I-like receptor signaling pathway
cgib04920
Adipocytokine signaling pathway
cgib05132
Salmonella infection
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127957622
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127957622
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127957622
09143 Cell growth and death
04210 Apoptosis
127957622
04217 Necroptosis
127957622
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127957622
04622 RIG-I-like receptor signaling pathway
127957622
09152 Endocrine system
04920 Adipocytokine signaling pathway
127957622
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127957622
09171 Infectious disease: bacterial
05132 Salmonella infection
127957622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127957622
04121 Ubiquitin system [BR:
cgib04121
]
127957622
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127957622
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127957622
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
127957622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAFD1-XIAF1_ZnF
ADIP
Sina_ZnF
TMF_DNA_bd
Paramyxo_NS_C
zf-U11-48K
Motif
Other DBs
NCBI-GeneID:
127957622
NCBI-ProteinID:
XP_052412206
LinkDB
All DBs
Position
B5:4364440..4398378
Genome browser
AA seq
495 aa
AA seq
DB search
MRFAMICQKARVEDPAAQLKLKSLLLKSFLFISLGPIPCEACRAEGIFEEATSMLNIAVA
FPDNAARREIDSLPAKCPNDGCSWSGTLKEYEGQHEGRCDFERVKCEACQALILVSEKDR
HNERECEARTLNCKYCKVTFIFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHIKSCA
KSKSACQFSEIGCRAVVDSGKQQEHEQTSMTEHLRLMLAVLSSVRQRAEGTGEWQEDSGL
GLYRGPEDASPLGAHAAGHNAGRGGGPGVQQKVTALENIVCVLNREVERSALTLEALSRQ
HRFDQEKIESLSNKVRQLERTLTMRDLQLAESEQSLRELQFCTYDGVFIWKIADFSRRRQ
DAVGGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALLKWPF
SQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYLR
DDTIFIKAIVDLTGL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttgcaatgatctgccagaaggcacgggttgaagacccagctgcacagttaaag
ttaaaatctttactgttaaaatctttcctcttcattagcttggggcccataccatgcgaa
gcctgtcgtgctgagggtatatttgaagaggcaacatctatgctcaatattgcagtggca
tttcctgataatgctgcacgaagggaaattgatagcttgccagccaaatgcccaaatgat
ggatgtagttggtctggaacactgaaagagtatgagggtcaacatgaaggtcgttgtgac
tttgaacgtgtcaaatgtgaagcatgtcaagcactcatcttggtcagtgagaaagaccgc
cacaatgagcgggaatgcgaggccagaaccctgaactgcaaatactgcaaggtcacattc
atcttcaaagaaattaaggcacatgatgaaatatgtcagaaattccccatgcaatgcaaa
gactgtggtaaaaagaaaatccccagagagaagtttcaagagcacatcaagtcttgtgca
aagtctaagtcagcatgccagttcagtgaaattggctgcagggcggtggttgacagtggt
aagcagcaggagcatgagcagaccagcatgacggaacatttgcgtctcatgctagccgtg
ctgtcctctgtgcgccagcgggcagaggggacaggagagtggcaggaagattctggactg
ggattgtatcgtggacctgaagatgcatctccattgggggctcatgctgctggccataat
gcaggaagaggaggcggtcctggtgtacagcagaaagtcacagcattggagaacatagtg
tgtgtgttgaacagggaggtggagcgatcggccctcaccctggaggcactatcccgtcaa
catcggtttgaccaggaaaagatagaaagcttgtcaaacaaggtgcgacagctagaacgg
actttaaccatgcgagatctgcagttagcagaatctgaacagtccttgcgggagctgcag
ttttgtacatacgatggagttttcatttggaaaattgcagacttctctcgtcgcagacaa
gacgcagtggggggccgggcacctgccatgttctcacctgcgttctactccagtaaatat
gggtataagatgtgtctgagactttacctgaatggtgacggcacaggccggggcactcat
ctgtctctattttttgtggtcatgaggggcaaatatgatgccttgctgaagtggcccttt
agccagaaggtgacattgatgttgttggaccagaacaacagagagcacatcattgatgcc
tttaggcctgacgtgagctccacatccttccagagacccatcagtgagatgaacatagcc
agtggttgtcctctcttctgccctctagccaagctggcaggcaaaagctcatatctgaga
gatgacaccatatttattaaagccatagttgacctcactggcttataa
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