KEGG   Carassius gibelio (silver crucian carp): 127957622
Entry
127957622         CDS       T08819                                 
Name
(RefSeq) TNF receptor-associated factor 2-like
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib04010  MAPK signaling pathway
cgib04137  Mitophagy - animal
cgib04141  Protein processing in endoplasmic reticulum
cgib04210  Apoptosis
cgib04217  Necroptosis
cgib04621  NOD-like receptor signaling pathway
cgib04622  RIG-I-like receptor signaling pathway
cgib04920  Adipocytokine signaling pathway
cgib05132  Salmonella infection
cgib05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    127957622
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    127957622
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    127957622
  09143 Cell growth and death
   04210 Apoptosis
    127957622
   04217 Necroptosis
    127957622
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    127957622
   04622 RIG-I-like receptor signaling pathway
    127957622
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    127957622
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    127957622
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    127957622
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgib03019]
    127957622
   04121 Ubiquitin system [BR:cgib04121]
    127957622
Enzymes [BR:cgib01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     127957622
Messenger RNA biogenesis [BR:cgib03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     127957622
Ubiquitin system [BR:cgib04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    127957622
SSDB
Motif
Pfam: TRAF-mep_MATH TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAFD1-XIAF1_ZnF ADIP Sina_ZnF TMF_DNA_bd Paramyxo_NS_C zf-U11-48K
Other DBs
NCBI-GeneID: 127957622
NCBI-ProteinID: XP_052412206
LinkDB
Position
B5:4364440..4398378
AA seq 495 aa
MRFAMICQKARVEDPAAQLKLKSLLLKSFLFISLGPIPCEACRAEGIFEEATSMLNIAVA
FPDNAARREIDSLPAKCPNDGCSWSGTLKEYEGQHEGRCDFERVKCEACQALILVSEKDR
HNERECEARTLNCKYCKVTFIFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHIKSCA
KSKSACQFSEIGCRAVVDSGKQQEHEQTSMTEHLRLMLAVLSSVRQRAEGTGEWQEDSGL
GLYRGPEDASPLGAHAAGHNAGRGGGPGVQQKVTALENIVCVLNREVERSALTLEALSRQ
HRFDQEKIESLSNKVRQLERTLTMRDLQLAESEQSLRELQFCTYDGVFIWKIADFSRRRQ
DAVGGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALLKWPF
SQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKSSYLR
DDTIFIKAIVDLTGL
NT seq 1488 nt   +upstreamnt  +downstreamnt
atgaggtttgcaatgatctgccagaaggcacgggttgaagacccagctgcacagttaaag
ttaaaatctttactgttaaaatctttcctcttcattagcttggggcccataccatgcgaa
gcctgtcgtgctgagggtatatttgaagaggcaacatctatgctcaatattgcagtggca
tttcctgataatgctgcacgaagggaaattgatagcttgccagccaaatgcccaaatgat
ggatgtagttggtctggaacactgaaagagtatgagggtcaacatgaaggtcgttgtgac
tttgaacgtgtcaaatgtgaagcatgtcaagcactcatcttggtcagtgagaaagaccgc
cacaatgagcgggaatgcgaggccagaaccctgaactgcaaatactgcaaggtcacattc
atcttcaaagaaattaaggcacatgatgaaatatgtcagaaattccccatgcaatgcaaa
gactgtggtaaaaagaaaatccccagagagaagtttcaagagcacatcaagtcttgtgca
aagtctaagtcagcatgccagttcagtgaaattggctgcagggcggtggttgacagtggt
aagcagcaggagcatgagcagaccagcatgacggaacatttgcgtctcatgctagccgtg
ctgtcctctgtgcgccagcgggcagaggggacaggagagtggcaggaagattctggactg
ggattgtatcgtggacctgaagatgcatctccattgggggctcatgctgctggccataat
gcaggaagaggaggcggtcctggtgtacagcagaaagtcacagcattggagaacatagtg
tgtgtgttgaacagggaggtggagcgatcggccctcaccctggaggcactatcccgtcaa
catcggtttgaccaggaaaagatagaaagcttgtcaaacaaggtgcgacagctagaacgg
actttaaccatgcgagatctgcagttagcagaatctgaacagtccttgcgggagctgcag
ttttgtacatacgatggagttttcatttggaaaattgcagacttctctcgtcgcagacaa
gacgcagtggggggccgggcacctgccatgttctcacctgcgttctactccagtaaatat
gggtataagatgtgtctgagactttacctgaatggtgacggcacaggccggggcactcat
ctgtctctattttttgtggtcatgaggggcaaatatgatgccttgctgaagtggcccttt
agccagaaggtgacattgatgttgttggaccagaacaacagagagcacatcattgatgcc
tttaggcctgacgtgagctccacatccttccagagacccatcagtgagatgaacatagcc
agtggttgtcctctcttctgccctctagccaagctggcaggcaaaagctcatatctgaga
gatgacaccatatttattaaagccatagttgacctcactggcttataa

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